BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0615600 Os04g0615600|AK111092
         (175 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0615600  Conserved hypothetical protein                      248   2e-66
Os01g0192500                                                      134   3e-32

>Os04g0615600 Conserved hypothetical protein
          Length = 175

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 129/175 (73%)

Query: 1   TAAPSEEGKKSDGNGGEKPTSPADEKSXXXXXXXXXXXXXXXXXXXXXXQECSKCTAGKE 60
           TAAPSEEGKKSDGNGGEKPTSPADEKS                      QECSKCTAGKE
Sbjct: 1   TAAPSEEGKKSDGNGGEKPTSPADEKSAARKDEGKDGKGDKSSSAAACKQECSKCTAGKE 60

Query: 61  AADEAGRAGGKTASSKDTVTAKNSDDVDGDKSEPAAVAVEYQYHHHYSRPEPAMVVPVHL 120
           AADEAGRAGGKTASSKDTVTAKNSDDVDGDKSEPAAVAVEYQYHHHYSRPEPAMVVPVHL
Sbjct: 61  AADEAGRAGGKTASSKDTVTAKNSDDVDGDKSEPAAVAVEYQYHHHYSRPEPAMVVPVHL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXMLRHPPQLRPQPSRFDEDYFNEDNTVGCHVM 175
                                   MLRHPPQLRPQPSRFDEDYFNEDNTVGCHVM
Sbjct: 121 PYYAANATPYYAGGYYPIPPPMPAMLRHPPQLRPQPSRFDEDYFNEDNTVGCHVM 175



>Os01g0192500 
          Length = 283

 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 79/116 (68%), Gaps = 6/116 (5%)

Query: 6   EEGKKSDGNGGEKPTSPADEKSXXXXXXXXXXXXXXXXXXXXXXQECSKCTAGKEAA--- 62
           EEGKKS+ NGGEKPTSPADEKS                      QECSKCTA KEAA   
Sbjct: 114 EEGKKSNSNGGEKPTSPADEKSARKDEGKDGKGNKSPATAAACKQECSKCTARKEAATRA 173

Query: 63  DEAGRAGGKTASSKDTVTAKNSDDVDGDKSEPAAVAVEYQYHHHYSRPEPAMVVPV 118
           DEAGRAGGKTASSKD  T  + D   GDKSEPAAVAVEYQYHHHY+  EPAMVVPV
Sbjct: 174 DEAGRAGGKTASSKDATTKSSGD---GDKSEPAAVAVEYQYHHHYNWAEPAMVVPV 226



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.125    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,008,707
Number of extensions: 198940
Number of successful extensions: 825
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 152 (63.2 bits)