BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0613200 Os04g0613200|AK109490
         (500 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0613200  Virulence factor, pectin lyase fold family pro...   785   0.0  

>Os04g0613200 Virulence factor, pectin lyase fold family protein
          Length = 500

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/445 (88%), Positives = 395/445 (88%)

Query: 56  ERRYMDLAMRRMESVRSSFVARRELATSTAASSSRVYHVXXXXXXXXXXXXXXXXXXXXX 115
           ERRYMDLAMRRMESVRSSFVARRELATSTAASSSRVYHV                     
Sbjct: 56  ERRYMDLAMRRMESVRSSFVARRELATSTAASSSRVYHVTDYGADPTGGADATAAINSAI 115

Query: 116 XXXFRRPSNATMTGGIPDLGGAEIHLDGGSYLLKGPLSLPASGGGNLKIHSGSLRAADDF 175
              FRRPSNATMTGGIPDLGGAEIHLDGGSYLLKGPLSLPASGGGNLKIHSGSLRAADDF
Sbjct: 116 ADAFRRPSNATMTGGIPDLGGAEIHLDGGSYLLKGPLSLPASGGGNLKIHSGSLRAADDF 175

Query: 176 PTDRYLIELXXXXXXXXXXXXXXXXYYYEYVTLRDLMLDCNYRGGGVRVVDSLRVGVDNC 235
           PTDRYLIEL                YYYEYVTLRDLMLDCNYRGGGVRVVDSLRVGVDNC
Sbjct: 176 PTDRYLIELSAKAAGGGGGSSPAMSYYYEYVTLRDLMLDCNYRGGGVRVVDSLRVGVDNC 235

Query: 236 YVVHFATDGVAVSGGHETFVRNTFLGQHMTAGGDPGERSFTGTGIRLDGXXXXXXXXXXF 295
           YVVHFATDGVAVSGGHETFVRNTFLGQHMTAGGDPGERSFTGTGIRLDG          F
Sbjct: 236 YVVHFATDGVAVSGGHETFVRNTFLGQHMTAGGDPGERSFTGTGIRLDGNDNSVSDVVVF 295

Query: 296 SAATGIMVTGGANAISGVHCYNKATGFGGAGIYLKVPGLTQTWITNCYMDYTGIVAEDPV 355
           SAATGIMVTGGANAISGVHCYNKATGFGGAGIYLKVPGLTQTWITNCYMDYTGIVAEDPV
Sbjct: 296 SAATGIMVTGGANAISGVHCYNKATGFGGAGIYLKVPGLTQTWITNCYMDYTGIVAEDPV 355

Query: 356 LLHVSGSFFLGDANVVLKAVNGVARGVQIVGNLFNGRGKGVDIVELDGEFATVEQVYVAQ 415
           LLHVSGSFFLGDANVVLKAVNGVARGVQIVGNLFNGRGKGVDIVELDGEFATVEQVYVAQ
Sbjct: 356 LLHVSGSFFLGDANVVLKAVNGVARGVQIVGNLFNGRGKGVDIVELDGEFATVEQVYVAQ 415

Query: 416 NAATGMTVRSTTARAAAEGNGSSWTVDFSPVLLFPDRIGHVQYSLAAGDAFPGHALRNVS 475
           NAATGMTVRSTTARAAAEGNGSSWTVDFSPVLLFPDRIGHVQYSLAAGDAFPGHALRNVS
Sbjct: 416 NAATGMTVRSTTARAAAEGNGSSWTVDFSPVLLFPDRIGHVQYSLAAGDAFPGHALRNVS 475

Query: 476 GNRVVIATDAAVSATVHVLVDQNSS 500
           GNRVVIATDAAVSATVHVLVDQNSS
Sbjct: 476 GNRVVIATDAAVSATVHVLVDQNSS 500



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,552,319
Number of extensions: 641637
Number of successful extensions: 1200
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 395
Effective length of database: 11,553,331
Effective search space: 4563565745
Effective search space used: 4563565745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)