Os04g0613200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os04g0613200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 254.18 | 0.749 | 7.65 | -2.05 | 1.51 | -1.43 | -0.845 | -0.334 | -0.687 | 17.1 | 20.22 | 1500 | -- | -- |
| 254.38 | 0.743 | 7.64 | -2 | 1.51 | -1.37 | -0.847 | -- | -0.675 | 17.1 | 20.2 | 1500 | -- | -- |
| 255.93 | 0.745 | 7.65 | -2.04 | 1.5 | -1.43 | -- | -0.288 | -0.688 | 17.2 | 20.27 | 1478 | -- | -- |
| 256.08 | 0.745 | 7.65 | -1.99 | 1.5 | -1.39 | -- | -- | -0.676 | 17.2 | 20.24 | 1478 | -- | -- |
| 369.71 | 0.896 | 7.64 | -1.82 | -- | -1.39 | -- | 0.141 | -0.665 | -- | 20.2 | 2626 | -- | -- |
| 292.4 | 0.802 | 7.71 | -2.55 | 1.53 | -- | -1.04 | -- | -0.967 | 17.1 | -- | -- | -- | -- |
| 295.12 | 0.804 | 7.71 | -2.55 | 1.53 | -- | -- | -- | -0.972 | 17.1 | -- | -- | -- | -- |
| 369.2 | 0.895 | 7.61 | -1.77 | -- | -1.51 | -- | -- | -0.621 | -- | 20.1 | 2643 | -- | -- |
| 289.8 | 0.793 | 7.54 | -- | 1.51 | -2.16 | -- | -- | -0.198 | 17.2 | 18.1 | 47520 | -- | -- |
| 416.97 | 0.954 | 7.7 | -2.61 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 466.63 | 1.01 | 7.65 | -- | 1.57 | -- | -- | -- | -0.688 | 17.1 | -- | -- | -- | -- |
| 409.25 | 0.942 | 7.52 | -- | -- | -2.21 | -- | -- | -0.216 | -- | 18.05 | 47520 | -- | -- |
| 595.98 | 1.14 | 7.63 | -- | -- | -- | -- | -- | -0.722 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 2 | 244.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 3 | 244.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 4 | 244.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 6 | 244.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 23 | 245.53 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 26 | 245.67 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 27 | 245.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 28 | 245.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 38 | 246.00 | atmosphere | 995 | 43200 | > th | dose independent | sin | 8 | NA |
| 59 | 246.39 | atmosphere | 995 | 43200 | < th | dose independent | sin | 8 | NA |
| 70 | 246.50 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 17 |
| 101 | 247.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 115 | 247.29 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 11 | NA |
| 118 | 247.34 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 14 |
| 124 | 247.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 18 |
| 140 | 247.78 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 142 | 247.81 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 149 | 247.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 165 | 248.08 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 169 | 248.11 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 189 | 248.40 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 190 | 248.41 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 200 | 248.59 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 207 | 248.65 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 210 | 248.68 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 213 | 248.74 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 220 | 248.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 237 | 249.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 294 | 249.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 382 | 250.81 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 389 | 250.89 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 15 | NA |
| 406 | 251.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 411 | 251.23 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 445 | 251.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 517 | 252.23 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 541 | 252.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 555 | 252.49 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 561 | 252.51 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 570 | 252.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 651 | 253.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 785 | 254.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 821 | 254.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 876 | 254.91 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 877 | 254.91 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 898 | 255.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 917 | 255.21 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 963 | 255.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |