BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0597900 Os04g0597900|J065079G06
         (785 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0597900  Conserved hypothetical protein                     1063   0.0  

>Os04g0597900 Conserved hypothetical protein
          Length = 785

 Score = 1063 bits (2749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/785 (72%), Positives = 567/785 (72%)

Query: 1   MDFHALPRRDLQALCKRNGVRXXXXXXXXXXXXXXXXXVDGIEEFVKQXXXXXXXXXXXX 60
           MDFHALPRRDLQALCKRNGVR                 VDGIEEFVKQ            
Sbjct: 1   MDFHALPRRDLQALCKRNGVRANMTNAAMADALAKLATVDGIEEFVKQAVALPPAPATKP 60

Query: 61  XXXXXXEEDPREKKGSPLPRGRRVTVSSPEVVNLDDSDEEAPGQSKDAPLPRGRRGTVRS 120
                 EEDPREKKGSPLPRGRRVTVSSPEVVNLDDSDEEAPGQSKDAPLPRGRRGTVRS
Sbjct: 61  AVKAVAEEDPREKKGSPLPRGRRVTVSSPEVVNLDDSDEEAPGQSKDAPLPRGRRGTVRS 120

Query: 121 SKLIRPXXXXXXXXXXXXXXXNAPVHXXXXXXXXXXXXXXPVVAPTTRRRAAPTSKIETG 180
           SKLIRP               NAPVH              PVVAPTTRRRAAPTSKIETG
Sbjct: 121 SKLIRPDDGEEEGKEDENRGENAPVHGEGRRGASRRARAEPVVAPTTRRRAAPTSKIETG 180

Query: 181 DVAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAASAEEKVPXXXXXXXXXXXKKPD 240
           DVAVE                              VAASAEEKVP           KKPD
Sbjct: 181 DVAVEAPPAPTTRRRPQTSTEAAPAPTTRRRAQSTVAASAEEKVPRGRRTTRRAAAKKPD 240

Query: 241 MLEEETREPLAPEQNSAHEEPVQEEQGIXXXXXXXXXXXXXQECLPDPDAXXXXXXXXXX 300
           MLEEETREPLAPEQNSAHEEPVQEEQGI             QECLPDPDA          
Sbjct: 241 MLEEETREPLAPEQNSAHEEPVQEEQGIEVEVPAETVEAVAQECLPDPDAVVEEKPVQEE 300

Query: 301 XXXISVLLTISLAPFHSSLVGRSDLSVPVRLVNSGIXXXXXXXXXXXXXQECSPXXXXXX 360
              ISVLLTISLAPFHSSLVGRSDLSVPVRLVNSGI             QECSP      
Sbjct: 301 EGEISVLLTISLAPFHSSLVGRSDLSVPVRLVNSGIEVEAPAETVEAVAQECSPDAVVED 360

Query: 361 XXXXXXXXXTISQDDSPIFGIVTGTIVGASEEAPVCNSECPKNMATEESSDTVSEEKEAV 420
                    TISQDDSPIFGIVTGTIVGASEEAPVCNSECPKNMATEESSDTVSEEKEAV
Sbjct: 361 EQAAVEAEQTISQDDSPIFGIVTGTIVGASEEAPVCNSECPKNMATEESSDTVSEEKEAV 420

Query: 421 PADEVPLVTVTCGEATRDAELPTNIGNAKXXXXXXXXXXXXXGFAVEVDGSETVDELIGT 480
           PADEVPLVTVTCGEATRDAELPTNIGNAK             GFAVEVDGSETVDELIGT
Sbjct: 421 PADEVPLVTVTCGEATRDAELPTNIGNAKEEDDDEMEAAHEAGFAVEVDGSETVDELIGT 480

Query: 481 LTEHADNAIQLNFSAELSCADEEAGVFATDDLQQSSATVKTMVXXXXXXXXXXXXXXXXX 540
           LTEHADNAIQLNFSAELSCADEEAGVFATDDLQQSSATVKTMV                 
Sbjct: 481 LTEHADNAIQLNFSAELSCADEEAGVFATDDLQQSSATVKTMVADSEANEEEDALEAENE 540

Query: 541 VGFAVEEKEVRTGDEPHETLSNDADGAIQLGEDALEAANEAGCAVEEKGVETVDEPHDXX 600
           VGFAVEEKEVRTGDEPHETLSNDADGAIQLGEDALEAANEAGCAVEEKGVETVDEPHD  
Sbjct: 541 VGFAVEEKEVRTGDEPHETLSNDADGAIQLGEDALEAANEAGCAVEEKGVETVDEPHDTE 600

Query: 601 XXXXXXXXXXGVVASEDLLQISETEQDEFNSDICHAVEHXXXXXXXXXXXXXXXXXMENA 660
                     GVVASEDLLQISETEQDEFNSDICHAVEH                 MENA
Sbjct: 601 TNAAENAQEEGVVASEDLLQISETEQDEFNSDICHAVEHNERDNVESVSSEREDVSMENA 660

Query: 661 FTGDLTLKFDGPGDLGDRNTSLLEEGARTLPLSTETPNNVTDAVVTAAEEMVSETMGVSN 720
           FTGDLTLKFDGPGDLGDRNTSLLEEGARTLPLSTETPNNVTDAVVTAAEEMVSETMGVSN
Sbjct: 661 FTGDLTLKFDGPGDLGDRNTSLLEEGARTLPLSTETPNNVTDAVVTAAEEMVSETMGVSN 720

Query: 721 KKSTELAAMEDGNEVKVVEKQKEDPVELVKLSLRTLRAKLKEQLTKHKRKEAKRVALGRL 780
           KKSTELAAMEDGNEVKVVEKQKEDPVELVKLSLRTLRAKLKEQLTKHKRKEAKRVALGRL
Sbjct: 721 KKSTELAAMEDGNEVKVVEKQKEDPVELVKLSLRTLRAKLKEQLTKHKRKEAKRVALGRL 780

Query: 781 DENVC 785
           DENVC
Sbjct: 781 DENVC 785



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.127    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,443,035
Number of extensions: 602312
Number of successful extensions: 1589
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1574
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 676
Effective length of database: 11,344,475
Effective search space: 7668865100
Effective search space used: 7668865100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 160 (66.2 bits)