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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0597900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0478) R2 : 0.0704
β1 : -0.227 (0.197) R2dD : 0.00393 R2D : -0.0135
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.0571 (0.0907) R2dE : 0.00101 R2E : 0.000492
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.01 (0.374) R2dD*E : 0.0834 R2D*E : 0.0661
γ1 : -0.0192 (0.113) R2dN8 : 0.000108 R2N8 : -0.00147
σ : 0.85
deviance : 333.45
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.78
memory length : 17
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.16 0.846 3.62 -0.223 0.406 -0.044 0.104 1.99 -0.0147 8.63 24.8 19 -- --
341.22 0.867 3.55 0.396 0.466 0.226 -0.438 -- 0.231 9.17 22.1 8 -- --
324.15 0.839 3.62 -0.22 0.407 -0.0468 -- 1.98 -0.016 8.52 24.8 17 -- --
341.86 0.867 3.55 0.378 0.47 0.221 -- -- 0.228 8.96 22.15 8 -- --
333.45 0.85 3.63 -0.227 -- -0.0571 -- 2.01 -0.0192 -- 24.78 17 -- --
344.16 0.87 3.56 0.33 0.419 -- -0.406 -- 0.165 8.62 -- -- -- --
344.65 0.869 3.56 0.316 0.423 -- -- -- 0.164 8.38 -- -- -- --
352.03 0.878 3.57 0.389 -- 0.742 -- -- 0.187 -- 16.77 5 -- --
345.49 0.87 3.56 -- 0.46 0.174 -- -- 0.174 8.78 22.1 6 -- --
354.61 0.88 3.57 0.318 -- -- -- -- 0.169 -- -- -- -- --
347.28 0.872 3.57 -- 0.425 -- -- -- 0.129 8.32 -- -- -- --
355.83 0.881 3.58 -- -- 0.543 -- -- 0.141 -- 16.6 18 -- --
357.29 0.882 3.58 -- -- -- -- -- 0.133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.69 wind 7 14400 > th dose dependent rect. 12 1
2 317.77 wind 9 14400 < th dose independent rect. 12 2
4 318.19 wind 7 14400 > th dose independent rect. 12 1
5 318.19 wind 9 14400 < th dose independent rect. 22 16
6 318.54 temperature 25 90 > th dose dependent rect. 21 12
8 318.61 humidity 80 14400 < th dose dependent rect. 5 1
11 318.93 wind 9 30 > th dose dependent rect. 10 2
33 319.27 wind 9 14400 < th dose independent rect. 5 9
34 319.28 wind 9 14400 < th dose independent rect. 9 5
35 319.33 wind 9 14400 < th dose independent rect. 7 7
36 319.35 wind 9 30 < th dose independent rect. 9 23
42 319.46 wind 9 14400 > th dose independent rect. 22 16
44 319.55 wind 9 14400 < th dose independent rect. 2 12
49 319.64 humidity 80 14400 > th dose independent rect. 4 1
50 319.64 humidity 80 14400 < th dose independent rect. 5 1
53 319.68 wind 9 30 > th dose independent rect. 11 1
88 319.84 temperature 25 30 > th dose independent sin 8 NA
93 320.02 wind 9 14400 > th dose independent rect. 5 9
98 320.10 temperature 25 30 > th dose independent rect. 21 13
100 320.13 wind 9 14400 > th dose dependent rect. 22 17
101 320.14 wind 7 14400 > th dose dependent rect. 10 4
104 320.18 wind 9 14400 > th dose independent rect. 3 11
140 320.23 wind 9 14400 > th dose independent rect. 9 5
143 320.23 wind 7 14400 > th dose dependent rect. 5 9
155 320.45 wind 7 14400 > th dose dependent rect. 7 7
196 320.86 wind 7 14400 > th dose dependent rect. 23 15
264 321.31 temperature 25 4320 > th dose dependent rect. 7 1
265 321.32 wind 9 10 > th dose dependent sin 7 NA
276 321.40 wind 9 14400 > th dose independent sin 5 NA
280 321.48 temperature 25 30 < th dose independent sin 7 NA
289 321.53 wind 9 14400 < th dose independent sin 5 NA
307 321.63 humidity 80 14400 < th dose dependent rect. 23 2
318 321.68 wind 9 14400 < th dose dependent rect. 12 1
353 321.87 wind 1 14400 > th dose dependent rect. 12 1
357 321.90 atmosphere 1000 30 > th dose independent rect. 9 23
414 322.21 wind 3 14400 < th dose independent rect. 12 1
427 322.35 wind 9 14400 > th dose dependent sin 5 NA
433 322.39 temperature 25 30 < th dose independent rect. 24 11
450 322.49 temperature 25 10 > th dose independent rect. 16 18
466 322.59 wind 9 30 < th dose independent sin 5 NA
474 322.64 atmosphere 1000 90 > th dose independent rect. 21 15
529 322.98 wind 1 90 > th dose dependent rect. 5 7
535 323.01 temperature 25 30 > th dose independent rect. 18 16
537 323.04 wind 9 30 > th dose independent sin 6 NA
544 323.09 temperature 25 10 > th dose dependent sin 10 NA
559 323.18 wind 3 43200 < th dose dependent rect. 21 2
563 323.22 wind 9 14400 > th dose independent rect. 19 21
573 323.25 wind 3 14400 > th dose independent rect. 12 1
578 323.33 wind 1 270 > th dose dependent rect. 8 1
602 323.54 temperature 20 720 > th dose dependent rect. 21 12
604 323.57 temperature 25 4320 > th dose dependent rect. 3 6
612 323.65 temperature 20 270 > th dose dependent rect. 4 5
641 323.82 wind 9 14400 > th dose independent rect. 19 19
666 324.08 atmosphere 1000 10 > th dose independent rect. 22 15
668 324.11 wind 1 10 > th dose dependent rect. 8 5
676 324.16 wind 3 1440 > th dose independent rect. 10 1
683 324.20 wind 9 14400 < th dose independent rect. 19 21
688 324.22 wind 3 1440 < th dose independent rect. 10 1
717 324.46 temperature 30 43200 < th dose independent rect. 15 1
726 324.49 wind 9 14400 > th dose dependent rect. 19 21
727 324.50 temperature 30 43200 > th dose independent rect. 15 1
776 324.66 wind 3 14400 < th dose independent rect. 2 1
778 324.66 wind 9 14400 < th dose independent rect. 19 19
794 324.80 temperature 25 10 > th dose independent rect. 5 5
802 324.81 temperature 25 4320 > th dose dependent rect. 23 11
810 324.83 wind 3 90 > th dose independent rect. 7 5
816 324.87 wind 3 270 > th dose independent rect. 8 1
817 324.87 wind 3 43200 < th dose dependent rect. 21 7
823 324.89 humidity 80 30 > th dose independent rect. 1 10
824 324.89 wind 9 14400 > th dose independent rect. 22 22
831 324.95 temperature 25 10 > th dose dependent rect. 18 15
843 325.01 temperature 25 30 > th dose independent rect. 16 21
845 325.01 radiation 30 90 < th dose dependent rect. 10 15
887 325.17 wind 9 14400 < th dose independent rect. 22 22
892 325.21 wind 9 14400 > th dose independent rect. 5 15
895 325.22 wind 9 14400 > th dose independent rect. 3 17
918 325.28 temperature 30 43200 < th dose independent rect. 15 16
923 325.29 temperature 30 43200 < th dose independent rect. 15 4
931 325.29 temperature 30 43200 < th dose independent rect. 15 14
936 325.30 temperature 30 43200 > th dose independent rect. 15 3
937 325.30 wind 3 43200 < th dose independent rect. 21 5
939 325.30 wind 9 14400 > th dose independent rect. 9 11
999 325.43 wind 9 14400 < th dose independent rect. 15 1