BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0584100 Os04g0584100|AK105292
         (270 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0584100  Conserved hypothetical protein                      375   e-104

>Os04g0584100 Conserved hypothetical protein
          Length = 270

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/270 (77%), Positives = 208/270 (77%)

Query: 1   MLLLAVVVRHGAARAPPGEHLHDEHPERVHVRVEAGASGEEALVXXXXXXXXXXXXXXXX 60
           MLLLAVVVRHGAARAPPGEHLHDEHPERVHVRVEAGASGEEALV                
Sbjct: 1   MLLLAVVVRHGAARAPPGEHLHDEHPERVHVRVEAGASGEEALVRHVAAGARHGLRRVVR 60

Query: 61  XXXEVDDTGXXXXXXXXXXXXXXHDVARLDXXXXXXXXXXXXXXLQRGRHAADYLVPSLP 120
              EVDDTG              HDVARLD              LQRGRHAADYLVPSLP
Sbjct: 61  HLVEVDDTGEAEVAEARAVLLVEHDVARLDVPVEDPAAAPVVQVLQRGRHAADYLVPSLP 120

Query: 121 GQLSRSSTAIQELVQATHGEVLVDEEQLASLVAPPDQLHEVAVRELADRVHLRDELLLSS 180
           GQLSRSSTAIQELVQATHGEVLVDEEQLASLVAPPDQLHEVAVRELADRVHLRDELLLSS
Sbjct: 121 GQLSRSSTAIQELVQATHGEVLVDEEQLASLVAPPDQLHEVAVRELADRVHLRDELLLSS 180

Query: 181 VGTGFVVRCHPLDGXXXXXXXXXXXXXXXEATSAELARGAEVGSRTPELLELKFDRAMGV 240
           VGTGFVVRCHPLDG               EATSAELARGAEVGSRTPELLELKFDRAMGV
Sbjct: 181 VGTGFVVRCHPLDGHLHVHAAQVAVVHGAEATSAELARGAEVGSRTPELLELKFDRAMGV 240

Query: 241 DHLLEVAVGEPSLPRRPSPHQEHKKRRHSK 270
           DHLLEVAVGEPSLPRRPSPHQEHKKRRHSK
Sbjct: 241 DHLLEVAVGEPSLPRRPSPHQEHKKRRHSK 270



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,634,007
Number of extensions: 256802
Number of successful extensions: 728
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)