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Os04g0584100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0337) R2 : 0.897
β1 : -3.87 (0.124) R2dD : 0.23 R2D : 0.144
β2 : 3.04 (0.0916) R2dC : 0.272 R2C : 0.321
β3 : -1.71 (0.0734) R2dE : 0.139 R2E : 0.294
β4 : 2.79 (0.404) R2dD*C : 0.0107 R2D*C : -0.0119
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.81 (0.0729) R2dN8 : 0.192 R2N8 : 0.111
σ : 0.628
deviance : 181.7
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C
peak time of C : 5.71
E
wheather : temperature
threshold : 21
memory length : 716
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.4
open length of G : 3.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.61 0.617 7.87 -4.12 2.94 -1.84 2.34 -1.8 -1.86 5.94 21 714 5.44 3.06
181.7 0.628 7.84 -3.87 3.04 -1.71 2.79 -- -1.81 5.71 21 716 5.4 3.03
184.05 0.632 7.88 -4.08 2.82 -1.91 -- -1.87 -1.89 6.01 21.09 718 5.48 3.27
199.53 0.658 7.85 -3.79 2.89 -1.92 -- -- -1.8 5.97 21.01 714 5.48 3.18
342.63 0.862 7.88 -3.33 -- -3.11 -- -1.07 -1.65 -- 20.9 916 5.97 3.85
279.25 0.783 7.92 -4.19 3.87 -- 3.61 -- -2.12 4.35 -- -- -- --
315.03 0.831 7.93 -4.22 3.9 -- -- -- -2.14 4.36 -- -- -- --
318.18 0.831 7.89 -3.34 -- -3.3 -- -- -1.78 -- 20.9 849 6.23 4.87
576.18 1.12 7.84 -- 2.79 -1.97 -- -- -1.48 5.93 21.1 729 5.48 3.28
1131.5 1.57 7.96 -4.06 -- -- -- -- -2.04 -- -- -- -- --
784 1.31 7.83 -- 3.82 -- -- -- -1.67 4.39 -- -- -- --
611.68 1.15 7.87 -- -- -3.49 -- -- -1.52 -- 20.9 845 6 5.73
1567.22 1.85 7.86 -- -- -- -- -- -1.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.94 temperature 10 720 > th dose dependent rect. 4 5
2 184.68 temperature 15 720 > th dose dependent rect. 5 3
10 190.63 temperature 30 720 < th dose dependent rect. 24 12
18 193.24 temperature 20 720 > th dose independent rect. 5 3
23 194.53 temperature 25 720 < th dose dependent sin 3 NA
32 195.53 temperature 25 720 < th dose dependent rect. 24 18
36 195.77 temperature 10 720 > th dose dependent rect. 21 12
44 196.13 temperature 10 720 > th dose dependent rect. 22 10
65 197.61 temperature 25 720 < th dose dependent rect. 5 7
82 198.39 temperature 30 720 < th dose dependent rect. 1 4
104 199.52 temperature 20 720 > th dose independent rect. 5 11
123 200.49 temperature 10 270 > th dose dependent rect. 4 13
129 200.71 temperature 10 720 > th dose dependent rect. 21 19
159 202.14 wind 3 14400 < th dose dependent rect. 23 1
160 202.18 temperature 30 270 < th dose dependent rect. 9 3
162 202.29 temperature 25 720 < th dose dependent rect. 8 1
170 202.70 temperature 25 1440 < th dose dependent rect. 21 1
173 202.81 temperature 30 270 < th dose dependent rect. 8 12
176 202.85 temperature 25 270 < th dose independent rect. 8 4
257 205.07 wind 1 43200 < th dose dependent rect. 4 4
296 205.83 wind 1 43200 > th dose independent rect. 21 9
304 205.92 temperature 30 90 < th dose dependent rect. 10 19
306 205.95 temperature 30 270 < th dose dependent rect. 7 22
308 205.98 temperature 10 720 > th dose dependent sin 6 NA
309 205.99 temperature 30 90 < th dose dependent rect. 11 2
422 207.34 temperature 25 270 < th dose independent rect. 8 11
440 207.55 temperature 25 1440 < th dose dependent sin 10 NA
492 207.94 temperature 30 90 < th dose dependent rect. 10 11
574 208.76 wind 1 43200 < th dose independent rect. 21 9
576 208.77 wind 1 43200 < th dose dependent rect. 4 7
583 208.86 temperature 30 90 < th dose dependent rect. 10 13
588 208.92 wind 1 43200 > th dose independent sin 9 NA
617 209.08 temperature 25 1440 < th dose dependent rect. 7 23
665 209.48 temperature 25 1440 < th dose dependent no NA NA
672 209.50 temperature 30 10 < th dose dependent rect. 10 4
688 209.57 temperature 25 1440 < th dose dependent rect. 4 23
749 210.07 wind 3 14400 < th dose dependent rect. 20 7
767 210.15 wind 3 14400 < th dose dependent rect. 21 4
845 210.88 wind 1 43200 > th dose independent rect. 8 1
859 211.00 wind 1 43200 < th dose dependent sin 8 NA
886 211.26 wind 1 43200 < th dose independent rect. 20 15
897 211.36 wind 1 43200 < th dose independent sin 9 NA
907 211.43 wind 1 43200 > th dose independent rect. 4 4
921 211.53 wind 1 43200 < th dose dependent rect. 22 10
934 211.59 wind 1 43200 < th dose dependent rect. 20 12
937 211.60 temperature 15 270 > th dose dependent rect. 3 21
956 211.69 wind 1 43200 < th dose independent rect. 22 13
982 211.89 wind 1 43200 < th dose dependent rect. 20 15
985 211.90 wind 1 43200 < th dose dependent rect. 22 14