BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0583000 Os04g0583000|AK068074
         (279 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0583000  Cyclin-like F-box domain containing protein         258   3e-69

>Os04g0583000 Cyclin-like F-box domain containing protein
          Length = 279

 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 150 LCSSGRCAWLRCGGSRWWSAAGGRWLSLGAEEEAVFCRPTDASWTPLACPAGAFAAVDVA 209
           LCSSGRCAWLRCGGSRWWSAAGGRWLSLGAEEEAVFCRPTDASWTPLACPAGAFAAVDVA
Sbjct: 150 LCSSGRCAWLRCGGSRWWSAAGGRWLSLGAEEEAVFCRPTDASWTPLACPAGAFAAVDVA 209

Query: 210 CQSGLFHLVSHHGRVAVFDLVSPLREVPTRRDRLHALAHTWDGRCLVQRRGGCGHEPLLL 269
           CQSGLFHLVSHHGRVAVFDLVSPLREVPTRRDRLHALAHTWDGRCLVQRRGGCGHEPLLL
Sbjct: 210 CQSGLFHLVSHHGRVAVFDLVSPLREVPTRRDRLHALAHTWDGRCLVQRRGGCGHEPLLL 269

Query: 270 ATWSGGGGAG 279
           ATWSGGGGAG
Sbjct: 270 ATWSGGGGAG 279




 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MASGWAQLPDDLLDNVAQRTAGIKDYVRLRAVCKSWRSFLRPRSRPPWLMLPYDPCSESC 60
          MASGWAQLPDDLLDNVAQRTAGIKDYVRLRAVCKSWRSFLRPRSRPPWLMLPYDPCSESC
Sbjct: 1  MASGWAQLPDDLLDNVAQRTAGIKDYVRLRAVCKSWRSFLRPRSRPPWLMLPYDPCSESC 60

Query: 61 VRGFLDASDGTVHEIDLPGHERQ 83
          VRGFLDASDGTVHEIDLPGHERQ
Sbjct: 61 VRGFLDASDGTVHEIDLPGHERQ 83



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,299,656
Number of extensions: 470353
Number of successful extensions: 1990
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1996
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)