BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0574600 Os04g0574600|AK121410
         (666 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0574600  Ankyrin repeat containing protein                  1030   0.0  

>Os04g0574600 Ankyrin repeat containing protein
          Length = 666

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/666 (77%), Positives = 515/666 (77%)

Query: 1   MAAASPESRPPRSLFDLPADFFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQPSEAP 60
           MAAASPESRPPRSLFDLPADFFD                             LSQPSEAP
Sbjct: 1   MAAASPESRPPRSLFDLPADFFDSSSLLGSHPSSAPSAAEPSESIRPAAAPPLSQPSEAP 60

Query: 61  GLRWTCNTCASEFESLQEQREHFKSDLHRLNVKLSIAGKTIIKEDDLDKADPDSLFDDLE 120
           GLRWTCNTCASEFESLQEQREHFKSDLHRLNVKLSIAGKTIIKEDDLDKADPDSLFDDLE
Sbjct: 61  GLRWTCNTCASEFESLQEQREHFKSDLHRLNVKLSIAGKTIIKEDDLDKADPDSLFDDLE 120

Query: 121 VSSVSGSEDELENGPASDRGLSAKDKGEFRKKLYFRCHSGDTVSIWRCILLKEHEEPVFN 180
           VSSVSGSEDELENGPASDRGLSAKDKGEFRKKLYFRCHSGDTVSIWRCILLKEHEEPVFN
Sbjct: 121 VSSVSGSEDELENGPASDRGLSAKDKGEFRKKLYFRCHSGDTVSIWRCILLKEHEEPVFN 180

Query: 181 SKSGQTESHGSTPFVQEDEMLNRVKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIA 240
           SKSGQTESHGSTPFVQEDEMLNRVKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIA
Sbjct: 181 SKSGQTESHGSTPFVQEDEMLNRVKNLTSEPRDASRLRIILLTSGGHFAGCVFDGNSVIA 240

Query: 241 HKTFHRYVVRAKAGKRQSGKDATGKVAHSAGSSLRRYNEAALKKEIQELIASWKSYFDLC 300
           HKTFHRYVVRAKAGKRQSGKDATGKVAHSAGSSLRRYNEAALKKEIQELIASWKSYFDLC
Sbjct: 241 HKTFHRYVVRAKAGKRQSGKDATGKVAHSAGSSLRRYNEAALKKEIQELIASWKSYFDLC 300

Query: 301 VCVFMYAPSKNRQMLFDGDKTQSVLQACDIRPIPLTVHRPTLKEAKRLYTNLTQLCYEME 360
           VCVFMYAPSKNRQMLFDGDKTQSVLQACDIRPIPLTVHRPTLKEAKRLYTNLTQLCYEME
Sbjct: 301 VCVFMYAPSKNRQMLFDGDKTQSVLQACDIRPIPLTVHRPTLKEAKRLYTNLTQLCYEME 360

Query: 361 CLSTDEPHVEDVTSFEQSKEAKQKKIMXXXXXXXXXXXXXXXPNKHEGTSIHPSNNETTP 420
           CLSTDEPHVEDVTSFEQSKEAKQKKIM               PNKHEGTSIHPSNNETTP
Sbjct: 361 CLSTDEPHVEDVTSFEQSKEAKQKKIMDSEESISVSSLSLDLPNKHEGTSIHPSNNETTP 420

Query: 421 LHEAAKSGNAQQTLELLEQGLDPCIKDARGKTPYLLASDKEVRNTFRRFMALNLDKWDWH 480
           LHEAAKSGNAQQTLELLEQGLDPCIKDARGKTPYLLASDKEVRNTFRRFMALNLDKWDWH
Sbjct: 421 LHEAAKSGNAQQTLELLEQGLDPCIKDARGKTPYLLASDKEVRNTFRRFMALNLDKWDWH 480

Query: 481 AADVPSALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQRT 540
           AADVPSALT                                               SQRT
Sbjct: 481 AADVPSALTKEMEESQAAKQAEKDAKKKARAKELKKLKKAREKEKEKEKEKAQASQSQRT 540

Query: 541 QSNVRGTSAGQMANATASMPGLKQKHQLPQPTALSKXXXXXXXXXXXXXXXXXXXXXXXX 600
           QSNVRGTSAGQMANATASMPGLKQKHQLPQPTALSK                        
Sbjct: 541 QSNVRGTSAGQMANATASMPGLKQKHQLPQPTALSKEEERQRKLAEEREKRAAAAERRFA 600

Query: 601 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGKVPFHRYNYKYCSTTCMHLHS 660
                                               LVGKVPFHRYNYKYCSTTCMHLHS
Sbjct: 601 ALAAQSSSTSGTAAAEHPPQRAAAADDTSCSCCFSSLVGKVPFHRYNYKYCSTTCMHLHS 660

Query: 661 EMLEDD 666
           EMLEDD
Sbjct: 661 EMLEDD 666



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,151,649
Number of extensions: 661843
Number of successful extensions: 1842
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 3
Length of query: 666
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 559
Effective length of database: 11,448,903
Effective search space: 6399936777
Effective search space used: 6399936777
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)