BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0564400 Os04g0564400|Os04g0564400
         (159 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0564400  Conserved hypothetical protein                      272   7e-74

>Os04g0564400 Conserved hypothetical protein
          Length = 159

 Score =  272 bits (695), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/159 (83%), Positives = 132/159 (83%)

Query: 1   MEDHGICRIEQRKAHREQPEDTSKIPNCMLYTKVRCEHKFEAKTKWIQFRFQLSTCAAIN 60
           MEDHGICRIEQRKAHREQPEDTSKIPNCMLYTKVRCEHKFEAKTKWIQFRFQLSTCAAIN
Sbjct: 1   MEDHGICRIEQRKAHREQPEDTSKIPNCMLYTKVRCEHKFEAKTKWIQFRFQLSTCAAIN 60

Query: 61  TSYLCTIADATSFPEHXXXXXXXXXXXXXXXTLRRACHRRPCPSLQSGEGGAWGRADFQR 120
           TSYLCTIADATSFPEH               TLRRACHRRPCPSLQSGEGGAWGRADFQR
Sbjct: 61  TSYLCTIADATSFPEHSAQSMPSSLAPSPLSTLRRACHRRPCPSLQSGEGGAWGRADFQR 120

Query: 121 LKVLEINRSGARXXXXXXXXXXXXNIFFRRSDLSRNILM 159
           LKVLEINRSGAR            NIFFRRSDLSRNILM
Sbjct: 121 LKVLEINRSGARFVDSSFTSSFDVNIFFRRSDLSRNILM 159



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,585,651
Number of extensions: 143596
Number of successful extensions: 372
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)