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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0564400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.14 (0.0293) R2 : 0.334
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.92 (0.13) R2dE : 0.342 R2E : 0.333
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0449 (0.0635) R2dN8 : 0.00102 R2N8 : -0.00782
σ : 0.547
deviance : 137.72
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 2.199
memory length : 863
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.42 0.537 5.15 -0.335 0.67 -2.14 -0.121 -0.252 0.0144 15 10.15 325 -- --
130.46 0.532 5.15 -0.295 0.669 -2.14 -0.162 -- 0.025 15.1 9.342 325 -- --
130.46 0.532 5.16 -0.352 0.67 -2.14 -- -0.351 0.00963 15 10.95 325 -- --
130.55 0.532 5.15 -0.298 0.669 -2.15 -- -- 0.0245 15 9.628 325 -- --
135.84 0.543 5.16 -0.31 -- -1.81 -- -0.14 -0.00869 -- 4.588 849 -- --
179.39 0.628 5.21 -0.777 0.364 -- 0.346 -- -0.287 10.2 -- -- -- --
179.79 0.628 5.21 -0.762 0.362 -- -- -- -0.285 10.7 -- -- -- --
135.86 0.543 5.15 -0.283 -- -1.81 -- -- -0.00158 -- 7.302 850 -- --
132.64 0.536 5.14 -- 0.709 -2.29 -- -- 0.0749 15.1 6.094 325 -- --
187.85 0.64 5.22 -0.769 -- -- -- -- -0.287 -- -- -- -- --
195.1 0.653 5.19 -- 0.367 -- -- -- -0.2 10.8 -- -- -- --
137.72 0.547 5.14 -- -- -1.92 -- -- 0.0449 -- 2.199 863 -- --
203.45 0.666 5.2 -- -- -- -- -- -0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 128.61 temperature 10 720 > th dose dependent rect. 17 16
6 130.36 temperature 15 720 > th dose dependent rect. 15 18
8 130.47 temperature 30 270 < th dose dependent rect. 14 21
9 130.51 temperature 30 720 < th dose dependent rect. 16 17
16 130.82 temperature 10 270 > th dose dependent no NA NA
27 131.15 temperature 15 270 > th dose dependent rect. 10 23
28 131.16 temperature 15 720 > th dose dependent rect. 13 20
29 131.20 temperature 15 270 > th dose dependent rect. 17 23
33 131.35 temperature 15 720 > th dose dependent sin 12 NA
40 131.56 temperature 15 270 > th dose dependent rect. 15 23
48 131.71 temperature 25 270 < th dose dependent rect. 21 23
66 132.11 temperature 10 4320 > th dose dependent rect. 21 2
67 132.11 temperature 30 4320 < th dose dependent rect. 21 2
83 132.27 temperature 25 270 < th dose dependent rect. 24 23
109 132.45 temperature 25 270 < th dose dependent no NA NA
118 132.52 temperature 15 270 > th dose dependent rect. 4 23
120 132.54 temperature 30 720 < th dose dependent sin 12 NA
156 132.73 temperature 15 270 > th dose dependent rect. 2 23
157 132.73 temperature 10 720 > th dose dependent rect. 6 23
167 132.79 temperature 15 720 > th dose dependent rect. 17 21
169 132.80 temperature 25 270 < th dose dependent rect. 6 23
203 132.96 temperature 15 1440 > th dose dependent rect. 21 12
214 132.99 temperature 15 270 > th dose dependent rect. 23 23
223 133.02 temperature 30 1440 < th dose dependent rect. 21 12
248 133.10 temperature 15 720 > th dose dependent rect. 8 23
300 133.29 temperature 25 270 < th dose dependent rect. 3 23
315 133.32 temperature 30 30 < th dose dependent rect. 9 23
330 133.34 temperature 15 1440 > th dose dependent rect. 17 12
354 133.38 temperature 30 1440 < th dose dependent rect. 17 12
518 133.69 temperature 10 1440 > th dose dependent rect. 3 6
541 133.73 temperature 30 1440 < th dose dependent rect. 3 6
670 133.94 temperature 15 720 > th dose dependent rect. 19 23
671 133.94 temperature 15 720 > th dose dependent rect. 21 23
825 134.21 temperature 30 30 < th dose dependent rect. 3 23
956 134.41 temperature 30 1440 < th dose dependent rect. 6 2