BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0564000 Os04g0564000|Os04g0564000
(339 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0564000 Carbohydrate-binding family V/XII domain conta... 568 e-162
Os06g0228950 100 2e-21
Os02g0744950 88 9e-18
Os01g0551600 82 7e-16
>Os04g0564000 Carbohydrate-binding family V/XII domain containing protein
Length = 339
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/318 (91%), Positives = 291/318 (91%)
Query: 22 DHGAVRSVHGYKVYXXXXXXXXXXXXXXXFVLTPASCREVPAPVAPPRILPAEWRGRPAY 81
DHGAVRSVHGYKVY FVLTPASCREVPAPVAPPRILPAEWRGRPAY
Sbjct: 22 DHGAVRSVHGYKVYGRGGRRRWERWVEREFVLTPASCREVPAPVAPPRILPAEWRGRPAY 81
Query: 82 REGQVVAAGAWRCILAFDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEK 141
REGQVVAAGAWRCILAFDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEK
Sbjct: 82 REGQVVAAGAWRCILAFDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEK 141
Query: 142 IPKLMQCDSEEKLSSWDARDKSSDEVHASESDSDDDLQSGEEEKPTVQKQRRANKKHIAS 201
IPKLMQCDSEEKLSSWDARDKSSDEVHASESDSDDDLQSGEEEKPTVQKQRRANKKHIAS
Sbjct: 142 IPKLMQCDSEEKLSSWDARDKSSDEVHASESDSDDDLQSGEEEKPTVQKQRRANKKHIAS 201
Query: 202 ITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVIX 261
ITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVI
Sbjct: 202 ITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVID 261
Query: 262 XXXXXXXXXXXVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQF 321
VQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQF
Sbjct: 262 DGDDHDDTGDDVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQF 321
Query: 322 REDVFKRRYRAKKDLAND 339
REDVFKRRYRAKKDLAND
Sbjct: 322 REDVFKRRYRAKKDLAND 339
>Os06g0228950
Length = 225
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 42/240 (17%)
Query: 98 FDSAAAPPRTPPPVLSPFLNPRLMCVPSLYNDLEKVFRFQNVEKIPKLMQCDSEEKLSSW 157
F S + P P PV S + + L ++L +F ++ L W
Sbjct: 22 FSSLSFPSFHPQPVYSTVMQSNV-----LQDELGVIF---------------EDDVLKYW 61
Query: 158 DARDKSSDEVHASESDSDDDLQSGEEEKPTVQKQRRANKKHIASITLVDIAQYFHLPIRE 217
D ++S ++V SE L G+E + R + ++T ++QYF++PI +
Sbjct: 62 DEMEQSENKVEKSEKGLPL-LYYGDENGAASKIMRDDVRSEEKALTFELVSQYFYMPITQ 120
Query: 218 ASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVIXXXXXXXXXXXXVQQEK 277
A+R L +G+++LK+KCR+ IPRWPHRK+KSL +LI +++ V QE
Sbjct: 121 AARELNVGLTLLKKKCRELGIPRWPHRKMKSLQTLINNVQ---------------VLQEA 165
Query: 278 HKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQFREDVFKRRYRAKKDLA 337
K EE+ ++ +ML+ E+ ++Q P + L+ +TK+ R+ FK Y+ ++ LA
Sbjct: 166 SKANNEEQLRMLV------EMLQEERRLLEQKPYVQLEEKTKRLRQACFKANYKKRRLLA 219
>Os02g0744950
Length = 232
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 154 LSSWDARDKSSDEVHASESDSDDDLQSGEEEKPT-VQKQRRANKKHIA--SITLVDIAQY 210
LS W D D H S+ D + + + EK +Q QR + + ++T ++QY
Sbjct: 67 LSIWG--DMKEDAYHRSDKDGGEKEEKLDHEKAMELQLQRLPSGRQSGEKTLTFELVSQY 124
Query: 211 FHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLIQDLEYVIXXXXXXXXXX 270
F LPI++A++ L +G+++LKR+CR IPRWPHRK+KSL+++I+++
Sbjct: 125 FCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSLETIIKNV-------------- 170
Query: 271 XXVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAMDLKVETKQFREDVFKRRY 330
QE +T +++ A+ +ML+ K+ I+Q P L TK R+ FK Y
Sbjct: 171 ----QELGMETGQDEDNTRNAV----EMLQQTKKLIEQSPDAKLDDWTKMLRQACFKENY 222
Query: 331 RAKKDLA 337
+ ++ LA
Sbjct: 223 KRRRLLA 229
>Os01g0551600
Length = 467
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 194 ANKKHIASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSLDSLI 253
K + I D+ +YF++PI +A+R + +G+++LK++CR+ + RWPHRK+KSL SLI
Sbjct: 278 GGKTRLDHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSLKSLI 337
Query: 254 QDLEYVIXXX-XXXXXXXXXVQQEKHKQTAEEKQEAIMALTRRKQMLETEKETIQQIPAM 312
+++ I V + K + A+ R + LE +++ PA+
Sbjct: 338 LNVQARINLTPRTFSISLVFVFFLQTNSEMGSKGMSAAAMRRELEALENCCALMERNPAV 397
Query: 313 DLKVETKQFREDVFKRRYRAKKDLAND 339
+L TK+ R+ FK Y+ ++ A D
Sbjct: 398 ELTERTKKLRQACFKENYKRRRAAAVD 424
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,787,603
Number of extensions: 489496
Number of successful extensions: 3519
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3517
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)