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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0564000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carbohydrate-binding family V/XII domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0351) R2 : 0.263
β1 : -1.54 (0.138) R2dD : 0.475 R2D : -0.561
β2 : -- (--) R2dC : -- R2C : --
β3 : 70.5 (5.77) R2dE : 64 R2E : -64.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -301 (24.6) R2dD*E : 64.2 R2D*E : -63.4
γ1 : 0.0996 (0.0536) R2dN8 : 0.00754 R2N8 : -0.315
σ : 0.469
deviance : 101.19
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 79.72
memory length : 94
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.01
open length of G : 4.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.54 0.471 3.13 -1.57 0.112 71.1 0.0253 -304 0.0968 4.8 79.75 94 0.984 4.03
131.88 0.539 2.82 -0.298 0.177 -0.088 -0.556 -- 0.0588 4.26 79.75 94 0.984 4.03
100.52 0.467 3.12 -1.56 0.113 70.7 -- -302 0.0961 4.76 79.7 94 1 4.02
132.69 0.54 2.82 -0.299 0.175 -0.266 -- -- 0.0608 4.46 71.55 121 2.72 5.37
101.19 0.469 3.12 -1.54 -- 70.5 -- -301 0.0996 -- 79.72 94 1.01 4.03
131.89 0.538 2.82 -0.299 0.176 -- -0.561 -- 0.0591 4.26 -- -- -- --
132.76 0.54 2.82 -0.294 0.173 -- -- -- 0.0622 4.42 -- -- -- --
134.32 0.54 2.82 -0.291 -- -0.208 -- -- 0.0658 -- 71.91 107 2.7 5.47
128.19 0.527 2.78 -- 0.131 1.48 -- -- 0.0854 4.2 92.98 120 1.03 4.25
134.36 0.542 2.82 -0.287 -- -- -- -- 0.0667 -- -- -- -- --
135.04 0.544 2.81 -- 0.167 -- -- -- 0.0949 4.46 -- -- -- --
124.27 0.519 2.79 -- -- 2.2 -- -- 0.0948 -- 93.14 109 1.85 1.1
136.54 0.545 2.81 -- -- -- -- -- 0.0986 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.87 humidity 80.0 90 < th dose independent rect. 1 4
3 100.87 humidity 80.0 90 < th dose dependent rect. 1 4
4 100.88 humidity 80.0 90 < th dose independent rect. 1 2
8 100.88 humidity 80.0 90 < th dose dependent rect. 1 2
13 101.24 humidity 90.0 10 < th dose dependent rect. 2 2
21 101.66 humidity 90.0 10 < th dose independent rect. 2 2
52 108.88 atmosphere 1005.0 10 > th dose dependent rect. 3 1
72 115.98 atmosphere 1005.0 10 > th dose independent rect. 2 2
76 116.49 temperature 20.0 10 < th dose dependent rect. 2 2
147 119.10 temperature 20.0 90 < th dose independent rect. 2 1
178 120.16 temperature 20.0 10 < th dose dependent rect. 2 9
227 121.34 wind 3.0 90 < th dose independent rect. 2 1
228 121.35 humidity 80.0 1440 > th dose independent rect. 1 1
247 121.63 temperature 30.0 90 < th dose dependent rect. 2 1
253 121.75 temperature 30.0 10 < th dose dependent rect. 2 2
257 121.89 wind 7.0 90 < th dose dependent rect. 2 1
287 122.37 precipitation 0.1 90 < th dose independent rect. 2 1
288 122.37 precipitation 0.1 90 < th dose dependent rect. 2 1
290 122.38 temperature 10.0 90 > th dose independent rect. 2 1
292 122.38 temperature 30.0 90 < th dose independent rect. 2 1
293 122.38 humidity 50.0 90 > th dose independent rect. 2 1
296 122.38 atmosphere 995.0 90 > th dose independent rect. 2 1
297 122.38 atmosphere 1010.0 90 < th dose independent rect. 2 1
299 122.38 radiation 1.0 90 < th dose independent rect. 2 1
305 122.38 temperature 10.0 90 > th dose independent rect. 3 23
306 122.38 radiation 1.0 90 < th dose dependent rect. 2 1
344 122.54 atmosphere 995.0 90 > th dose independent rect. 3 23
380 122.83 wind 9.0 90 < th dose independent rect. 3 23
385 122.87 humidity 90.0 270 < th dose independent rect. 23 20
389 122.89 wind 9.0 10 < th dose independent rect. 4 22
390 122.90 precipitation 0.1 10 < th dose independent rect. 2 2
391 122.90 precipitation 0.1 10 < th dose dependent rect. 2 2
409 123.14 wind 1.0 90 > th dose independent rect. 2 1
421 123.19 temperature 10.0 10 > th dose independent rect. 2 2
423 123.19 temperature 30.0 10 < th dose independent rect. 2 2
424 123.19 humidity 50.0 10 > th dose independent rect. 2 2
427 123.19 atmosphere 995.0 10 > th dose independent rect. 2 2
428 123.19 atmosphere 1010.0 10 < th dose independent rect. 2 2
430 123.19 radiation 1.0 10 < th dose independent rect. 2 2
435 123.19 temperature 10.0 10 > th dose independent rect. 4 22
437 123.19 radiation 1.0 10 < th dose dependent rect. 2 2
444 123.20 atmosphere 995.0 10 > th dose independent rect. 4 22
451 123.25 temperature 20.0 270 < th dose independent rect. 24 1
467 123.41 precipitation 0.1 10 < th dose independent rect. 4 22
469 123.41 precipitation 0.1 10 < th dose dependent rect. 4 22
472 123.46 humidity 90.0 90 < th dose independent rect. 1 20
473 123.46 precipitation 0.1 90 < th dose independent rect. 3 23
474 123.46 precipitation 0.1 90 < th dose dependent rect. 3 23
539 123.79 wind 9.0 1440 < th dose independent rect. 3 2
540 123.79 temperature 10.0 1440 > th dose independent rect. 3 2
543 123.79 temperature 30.0 1440 < th dose independent rect. 3 2
547 123.79 humidity 50.0 1440 > th dose independent rect. 3 2
556 123.79 atmosphere 995.0 1440 > th dose independent rect. 3 2
557 123.79 radiation 20.0 1440 < th dose independent rect. 3 2
570 123.79 temperature 10.0 1440 > th dose independent rect. 5 22
578 123.85 temperature 10.0 90 > th dose dependent rect. 2 1
634 124.40 atmosphere 1005.0 90 > th dose independent rect. 1 9
643 124.50 atmosphere 1000.0 90 > th dose dependent rect. 1 10
645 124.52 humidity 50.0 720 > th dose dependent rect. 20 10
677 124.80 wind 1.0 10 > th dose independent rect. 4 22
698 124.91 humidity 50.0 30 > th dose independent rect. 4 22
731 125.10 humidity 60.0 270 > th dose dependent rect. 19 14
743 125.13 wind 1.0 1440 < th dose dependent rect. 15 1
789 125.21 temperature 30.0 30 < th dose independent rect. 4 22
804 125.29 temperature 10.0 10 > th dose dependent rect. 2 2
885 125.47 humidity 50.0 10 > th dose dependent rect. 2 2
892 125.50 humidity 90.0 270 < th dose independent rect. 13 18
894 125.50 humidity 50.0 90 > th dose dependent rect. 2 1
987 125.70 atmosphere 1015.0 10 < th dose independent rect. 4 22
1000 125.74 temperature 20.0 10 < th dose independent rect. 2 9