BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0561600 Os04g0561600|AK068927
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0561600 Protein of unknown function DUF1014 family pro... 171 4e-43
Os03g0131800 122 2e-28
>Os04g0561600 Protein of unknown function DUF1014 family protein
Length = 234
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 104/234 (44%)
Query: 1 MPKKMGVNSKXXXXXXXXXXXXXXXXXXXXXXXXXXYWREAEGPXXXXXXXXXXXXXXXX 60
MPKKMGVNSK YWREAEGP
Sbjct: 1 MPKKMGVNSKAEAARERRSVAEADRRDRVERAKEEEYWREAEGPKSRAARRREEDAEKRA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPAPKVTXXXXXXXXXXXXXXXX 120
VGAPAPKVT
Sbjct: 61 EAAARKAENRRLAEAEAASASASAPSKTAARKASRVGAPAPKVTEAELARRREDERLRLE 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXVVLVANTNRDDSIIEARSVDEAIARMSLVDSEGALPADK 180
VVLVANTNRDDSIIEARSVDEAIARMSLVDSEGALPADK
Sbjct: 121 REPEAAKKRAARTAEEEEYERVVLVANTNRDDSIIEARSVDEAIARMSLVDSEGALPADK 180
Query: 181 HPERRLKASFXXXXXXXXXXXXXXXXGLTLNQYKDMIWKLWKKSPDNPLNQAAE 234
HPERRLKASF GLTLNQYKDMIWKLWKKSPDNPLNQAAE
Sbjct: 181 HPERRLKASFKAFEEAELPKLKEEKPGLTLNQYKDMIWKLWKKSPDNPLNQAAE 234
>Os03g0131800
Length = 238
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 92/232 (39%), Gaps = 4/232 (1%)
Query: 1 MPKKMGVNSKXXXXXXXXXXXXXXXXXXXXXXXXXXYWREAEGPXXXXXXXXXXXXXXXX 60
MPKKMGVN+K YW+ AEGP
Sbjct: 1 MPKKMGVNTKAEAARERRSAAEADRRDRDARAKEEAYWQAAEGPKSRSARRREEDAEKRA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPA-PKVTXXXXXXXXXXXXXXX 119
VG P PKVT
Sbjct: 61 EAAARRAENRRLAELEQQQLAAAARRPDRKAAR--VGGPVVPKVTEAELLRRREEERIRL 118
Query: 120 XXXXXXXXXXXXXXXXXXXXXXVVLVANTNRDDSIIEARSVDEAIARMSLVDSEGALPAD 179
VVLVANTNRDDSIIEARSV++AI +MS+ +E ALP D
Sbjct: 119 EREAEAAKKRQARTAEEEEYERVVLVANTNRDDSIIEARSVEDAIVKMSIA-AEPALPPD 177
Query: 180 KHPERRLKASFXXXXXXXXXXXXXXXXGLTLNQYKDMIWKLWKKSPDNPLNQ 231
+HPERRLK S+ GLTL+QYKDMIWKLWKKSPDNPLNQ
Sbjct: 178 RHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKDMIWKLWKKSPDNPLNQ 229
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,426,069
Number of extensions: 64776
Number of successful extensions: 153
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)