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Os04g0561600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1014 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.0196) R2 : 0.623
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.0494) R2dC : 0.616 R2C : 0.617
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0978 (0.0412) R2dN8 : 0.00602 R2N8 : 0.00727
σ : 0.369
deviance : 62.28
__
_____
C
peak time of C : 15.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.1 0.316 13.4 -0.177 1.05 -0.68 0.0871 0.471 -0.0773 17.6 9.76 10 -- --
46.12 0.316 13.4 -0.199 1.04 -0.666 0.036 -- -0.0771 17.6 9.3 9 -- --
44.94 0.312 13.4 -0.185 1.06 -0.677 -- 0.457 -0.0752 17.6 9.67 9 -- --
46.12 0.316 13.4 -0.214 1.05 -0.666 -- -- -0.0816 17.6 9.3 9 -- --
67.4 0.382 13.4 -0.548 -- -1.08 -- 0.855 -0.324 -- 2.037 379 -- --
60.24 0.364 13.4 -0.256 1.34 -- -0.283 -- -0.125 15.5 -- -- -- --
60.48 0.364 13.4 -0.261 1.34 -- -- -- -0.127 15.5 -- -- -- --
62.86 0.369 13.4 -0.379 -- -1.25 -- -- -0.225 -- 0.5399 456 -- --
47.33 0.32 13.4 -- 1.05 -0.686 -- -- -0.0548 17.6 9.371 8 -- --
161.15 0.593 13.4 -0.318 -- -- -- -- -0.162 -- -- -- -- --
62.28 0.369 13.4 -- 1.35 -- -- -- -0.0978 15.5 -- -- -- --
66.11 0.379 13.4 -- -- -1.23 -- -- -0.151 -- 0.8195 447 -- --
163.81 0.597 13.4 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.63 radiation 20.0 270 < th dose independent rect. 1 6
2 30.70 wind 7.0 270 < th dose independent rect. 1 6
3 30.73 humidity 70.0 270 > th dose independent rect. 1 6
4 30.75 radiation 40.0 270 < th dose dependent rect. 1 6
6 30.87 precipitation 0.1 270 < th dose independent rect. 1 6
7 30.87 precipitation 0.1 270 < th dose dependent rect. 1 6
11 30.92 temperature 10.0 270 > th dose independent rect. 1 6
13 30.92 temperature 30.0 270 < th dose independent rect. 1 6
14 30.92 humidity 50.0 270 > th dose independent rect. 1 6
16 30.92 atmosphere 995.0 270 > th dose independent rect. 1 6
17 30.92 atmosphere 1015.0 270 < th dose independent rect. 1 6
19 30.92 temperature 10.0 270 > th dose independent rect. 7 18
24 31.21 wind 9.0 270 < th dose independent rect. 7 18
25 31.23 precipitation 0.1 270 < th dose independent rect. 7 18
26 31.23 precipitation 0.1 270 < th dose dependent rect. 7 18
31 31.93 humidity 50.0 270 > th dose dependent rect. 1 6
34 32.22 temperature 10.0 270 > th dose dependent rect. 1 6
36 32.25 precipitation 0.1 270 < th dose independent rect. 6 8
37 32.25 precipitation 0.1 270 < th dose dependent rect. 6 8
38 32.26 temperature 10.0 270 > th dose independent rect. 6 8
39 32.26 atmosphere 995.0 270 > th dose independent rect. 6 8
40 32.26 atmosphere 1015.0 270 < th dose independent rect. 6 8
41 32.26 temperature 10.0 270 > th dose independent rect. 14 16
51 32.52 wind 9.0 270 < th dose dependent rect. 1 6
52 32.55 atmosphere 1010.0 270 < th dose independent rect. 2 4
54 32.60 wind 7.0 270 < th dose independent rect. 2 4
55 32.60 wind 9.0 270 < th dose independent rect. 14 16
60 32.69 wind 9.0 270 < th dose independent rect. 6 8
61 32.69 radiation 40.0 270 < th dose independent rect. 14 16
63 32.71 precipitation 0.1 270 < th dose independent rect. 2 4
65 32.71 precipitation 0.1 270 < th dose dependent rect. 2 4
67 32.74 temperature 10.0 270 > th dose independent rect. 2 4
69 32.74 temperature 30.0 270 < th dose independent rect. 2 4
70 32.74 humidity 50.0 270 > th dose independent rect. 2 4
73 32.74 atmosphere 995.0 270 > th dose independent rect. 2 4
78 32.74 temperature 10.0 270 > th dose independent rect. 6 20
79 32.75 radiation 1.0 270 < th dose dependent rect. 18 8
80 32.87 radiation 1.0 270 > th dose independent rect. 6 8
81 32.87 radiation 1.0 270 < th dose independent rect. 18 8
85 33.01 wind 9.0 270 < th dose independent rect. 6 20
88 33.06 temperature 10.0 270 > th dose dependent rect. 2 4
91 33.10 atmosphere 995.0 270 > th dose independent rect. 18 8
94 33.12 precipitation 0.1 270 < th dose independent rect. 14 16
95 33.12 precipitation 0.1 270 < th dose dependent rect. 14 16
96 33.13 wind 9.0 270 < th dose independent rect. 18 8
99 33.17 temperature 15.0 270 > th dose independent rect. 2 16
100 33.17 atmosphere 995.0 270 > th dose independent rect. 7 18
101 33.17 precipitation 0.1 270 < th dose independent rect. 6 20
102 33.17 precipitation 0.1 270 < th dose dependent rect. 6 20
103 33.18 temperature 10.0 270 > th dose independent rect. 18 8
104 33.18 humidity 50.0 270 > th dose independent rect. 18 8
109 33.18 atmosphere 1015.0 270 < th dose independent rect. 2 16
131 33.40 precipitation 0.1 270 < th dose independent rect. 2 16
134 33.40 precipitation 0.1 270 < th dose dependent rect. 2 16
136 33.42 wind 9.0 270 < th dose independent rect. 2 16
137 33.45 precipitation 0.1 270 < th dose independent rect. 18 8
139 33.45 precipitation 0.1 270 < th dose dependent rect. 18 8
146 33.51 temperature 30.0 270 < th dose independent rect. 18 8
160 33.54 humidity 50.0 270 > th dose dependent rect. 2 4
197 33.84 wind 9.0 270 < th dose dependent rect. 2 4
228 33.97 radiation 1.0 270 < th dose independent rect. 2 15
236 34.05 wind 7.0 270 < th dose independent rect. 3 2
246 34.09 temperature 10.0 270 > th dose independent rect. 3 2
248 34.09 temperature 30.0 270 < th dose independent rect. 3 2
249 34.09 humidity 50.0 270 > th dose independent rect. 3 2
252 34.09 atmosphere 995.0 270 > th dose independent rect. 3 2
253 34.09 atmosphere 1010.0 270 < th dose independent rect. 3 2
258 34.09 temperature 10.0 270 > th dose independent rect. 5 22
260 34.10 humidity 50.0 270 > th dose independent rect. 6 8
292 34.23 precipitation 0.1 270 < th dose independent rect. 3 2
294 34.23 precipitation 0.1 270 < th dose dependent rect. 3 2
338 34.65 atmosphere 995.0 270 > th dose independent rect. 14 16
347 34.71 radiation 10.0 270 < th dose dependent rect. 1 13
355 34.75 wind 1.0 270 > th dose independent rect. 1 6
356 34.75 radiation 1.0 270 < th dose dependent rect. 2 16
358 34.77 humidity 50.0 270 > th dose dependent rect. 3 2
363 34.81 wind 1.0 270 > th dose independent rect. 12 8
386 34.99 atmosphere 995.0 270 > th dose independent rect. 2 16
403 35.04 radiation 40.0 90 < th dose dependent rect. 15 18
419 35.12 atmosphere 995.0 270 > th dose independent rect. 6 20
429 35.17 temperature 15.0 270 > th dose independent rect. 12 8
467 35.22 atmosphere 1015.0 270 < th dose independent rect. 12 8
468 35.22 temperature 10.0 270 > th dose independent rect. 20 16
469 35.22 atmosphere 995.0 270 > th dose independent rect. 20 16
506 35.40 precipitation 0.1 270 < th dose independent rect. 20 16
508 35.40 precipitation 0.1 270 < th dose dependent rect. 20 16
515 35.45 wind 9.0 270 < th dose independent rect. 12 8
517 35.47 wind 9.0 270 < th dose independent rect. 20 16
532 35.56 precipitation 0.1 270 < th dose independent rect. 12 8
533 35.56 precipitation 0.1 270 < th dose dependent rect. 12 8
559 35.64 radiation 10.0 10 < th dose independent rect. 4 18
560 35.67 humidity 50.0 270 > th dose independent rect. 20 16
567 35.72 humidity 50.0 270 > th dose independent rect. 7 18
570 35.73 atmosphere 1015.0 270 < th dose independent rect. 7 18
609 35.88 radiation 1.0 270 < th dose independent sin 3 NA
613 35.89 wind 1.0 270 > th dose independent rect. 7 18
643 35.98 wind 9.0 270 < th dose dependent rect. 18 7
658 36.06 humidity 50.0 270 > th dose dependent rect. 18 8
662 36.08 radiation 1.0 270 > th dose independent sin 3 NA
683 36.08 humidity 50.0 270 > th dose dependent rect. 19 6
733 36.36 wind 1.0 270 > th dose independent rect. 6 7
735 36.39 atmosphere 1015.0 270 < th dose independent rect. 14 16
753 36.45 radiation 40.0 10 < th dose dependent rect. 14 19
767 36.48 radiation 30.0 10 < th dose independent rect. 3 6
779 36.48 wind 9.0 270 < th dose dependent rect. 7 18
814 36.59 radiation 40.0 10 < th dose dependent rect. 16 17
840 36.70 atmosphere 995.0 270 > th dose independent rect. 12 8
842 36.72 wind 5.0 10 < th dose independent rect. 3 6
874 36.82 humidity 70.0 10 > th dose independent rect. 3 6
883 36.85 radiation 1.0 10 > th dose independent rect. 8 8
919 36.98 wind 1.0 270 > th dose independent rect. 3 2
935 37.03 wind 9.0 10 < th dose dependent rect. 3 6
938 37.05 wind 1.0 270 > th dose independent rect. 19 7
979 37.16 humidity 50.0 270 > th dose independent rect. 6 20
985 37.18 temperature 10.0 10 > th dose independent rect. 3 6
987 37.18 temperature 30.0 10 < th dose independent rect. 3 6
988 37.18 humidity 50.0 10 > th dose independent rect. 3 6
990 37.18 atmosphere 995.0 10 > th dose independent rect. 3 6
991 37.18 atmosphere 1015.0 10 < th dose independent rect. 3 6
994 37.18 temperature 10.0 10 > th dose independent rect. 9 18
1000 37.21 radiation 1.0 270 < th dose dependent sin 2 NA