BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0558400 Os04g0558400|AK061440
         (428 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0558400  Acyl-CoA thioesterase family protein                820   0.0  

>Os04g0558400 Acyl-CoA thioesterase family protein
          Length = 428

 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/428 (93%), Positives = 399/428 (93%)

Query: 1   MDREEVTEFLGQVPLLQCLPSSSIRRIADAVLVKRYEPGGYVAREGDPVDGLYIILDGQA 60
           MDREEVTEFLGQVPLLQCLPSSSIRRIADAVLVKRYEPGGYVAREGDPVDGLYIILDGQA
Sbjct: 1   MDREEVTEFLGQVPLLQCLPSSSIRRIADAVLVKRYEPGGYVAREGDPVDGLYIILDGQA 60

Query: 61  EVSAPANTEEENRPDYVLNKYDYFGYGTNSSVHQVNVIAVSKLTCFVLPNQYGHLLQPKT 120
           EVSAPANTEEENRPDYVLNKYDYFGYGTNSSVHQVNVIAVSKLTCFVLPNQYGHLLQPKT
Sbjct: 61  EVSAPANTEEENRPDYVLNKYDYFGYGTNSSVHQVNVIAVSKLTCFVLPNQYGHLLQPKT 120

Query: 121 IWSAEETPENHSLLEQILHLEPLEVDIFRGFTLPGAPTFRQVFXXXXXXXXXXXXSKTVD 180
           IWSAEETPENHSLLEQILHLEPLEVDIFRGFTLPGAPTFRQVF            SKTVD
Sbjct: 121 IWSAEETPENHSLLEQILHLEPLEVDIFRGFTLPGAPTFRQVFGGQLIGQALAAASKTVD 180

Query: 181 CLKAVHSLHAIFLIAGDKNLPIIYQVHRARDGTSFATRKVEAKQKGLVIFTLIASFQKDE 240
           CLKAVHSLHAIFLIAGDKNLPIIYQVHRARDGTSFATRKVEAKQKGLVIFTLIASFQKDE
Sbjct: 181 CLKAVHSLHAIFLIAGDKNLPIIYQVHRARDGTSFATRKVEAKQKGLVIFTLIASFQKDE 240

Query: 241 LGFEHQAAIMPDVXXXXXXXXXXXXXXXXXTDPRFPMQYRNSAAKKKFVPWPIEMRFCED 300
           LGFEHQAAIMPDV                 TDPRFPMQYRNSAAKKKFVPWPIEMRFCED
Sbjct: 241 LGFEHQAAIMPDVPPPEELLNLEEIRERRLTDPRFPMQYRNSAAKKKFVPWPIEMRFCED 300

Query: 301 SASQHKPSLNYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHREKGLKTYSLSLDH 360
           SASQHKPSLNYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHREKGLKTYSLSLDH
Sbjct: 301 SASQHKPSLNYWFRARGKLSDDPALHRCVVAYASDLLYSGVSLNPHREKGLKTYSLSLDH 360

Query: 361 SIWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELVMSLTQEALIRRAKTPGQP 420
           SIWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELVMSLTQEALIRRAKTPGQP
Sbjct: 361 SIWFHKPVKADDWLLYVIDSPSAHGGRGFVTGRMFNRQGELVMSLTQEALIRRAKTPGQP 420

Query: 421 SQTPRPKL 428
           SQTPRPKL
Sbjct: 421 SQTPRPKL 428



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,662,330
Number of extensions: 608688
Number of successful extensions: 1081
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1080
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)