BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0555600 Os04g0555600|AK100443
(1285 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0555600 Concanavalin A-like lectin/glucanase domain co... 2356 0.0
>Os04g0555600 Concanavalin A-like lectin/glucanase domain containing protein
Length = 1285
Score = 2356 bits (6105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1184/1285 (92%), Positives = 1184/1285 (92%)
Query: 1 AVVAAELLPYLPCGDEPSPRTRMAVGIHATLRACTRNRAMCSSSGLLPVLLDSAEKLLIG 60
AVVAAELLPYLPCGDEPSPRTRMAVGIHATLRACTRNRAMCSSSGLLPVLLDSAEKLLIG
Sbjct: 1 AVVAAELLPYLPCGDEPSPRTRMAVGIHATLRACTRNRAMCSSSGLLPVLLDSAEKLLIG 60
Query: 61 MGRASSWDGTPLLHCIQLLGGHSLSVKDLHSWLGLVKKALGTSWATPLMLALEKAMGSEE 120
MGRASSWDGTPLLHCIQLLGGHSLSVKDLHSWLGLVKKALGTSWATPLMLALEKAMGSEE
Sbjct: 61 MGRASSWDGTPLLHCIQLLGGHSLSVKDLHSWLGLVKKALGTSWATPLMLALEKAMGSEE 120
Query: 121 ARGPAATFEFDGESSGLLGPGDSRWPFSNGYGFATWIYIESFSDTLXXXXXXXXXXXXXX 180
ARGPAATFEFDGESSGLLGPGDSRWPFSNGYGFATWIYIESFSDTL
Sbjct: 121 ARGPAATFEFDGESSGLLGPGDSRWPFSNGYGFATWIYIESFSDTLSTATAAAAIAAAAA 180
Query: 181 XXXXXXXXXXXXXXXXXXXGEGTTHMPRLFSFLSSDNQGVEAYFHGQFLVVESGGGRGKK 240
GEGTTHMPRLFSFLSSDNQGVEAYFHGQFLVVESGGGRGKK
Sbjct: 181 ATSGKSSAMSAAAAASALAGEGTTHMPRLFSFLSSDNQGVEAYFHGQFLVVESGGGRGKK 240
Query: 241 ASLHFTYAFKPQRWYFVGLEHTNKHGLLGKGDSELRLYVDGSLHESRPFEFPRISKPLAF 300
ASLHFTYAFKPQRWYFVGLEHTNKHGLLGKGDSELRLYVDGSLHESRPFEFPRISKPLAF
Sbjct: 241 ASLHFTYAFKPQRWYFVGLEHTNKHGLLGKGDSELRLYVDGSLHESRPFEFPRISKPLAF 300
Query: 301 CCIGTNPPPTIAGLQRRRRQCPLFAEMGPIYIFREPIGPERMGRLASRGGDVLPSFGNGA 360
CCIGTNPPPTIAGLQRRRRQCPLFAEMGPIYIFREPIGPERMGRLASRGGDVLPSFGNGA
Sbjct: 301 CCIGTNPPPTIAGLQRRRRQCPLFAEMGPIYIFREPIGPERMGRLASRGGDVLPSFGNGA 360
Query: 361 GLPWRATNDHVKNMAEESFTLNQQIGGCLHLLYHPSLLNGRLCPDASPSGSAGTHRRPAE 420
GLPWRATNDHVKNMAEESFTLNQQIGGCLHLLYHPSLLNGRLCPDASPSGSAGTHRRPAE
Sbjct: 361 GLPWRATNDHVKNMAEESFTLNQQIGGCLHLLYHPSLLNGRLCPDASPSGSAGTHRRPAE 420
Query: 421 VLGLVHVSSRVRPAESLWALAYGGPMALLPLTISNVQMDSLEPMLGELSIATASLSAPIF 480
VLGLVHVSSRVRPAESLWALAYGGPMALLPLTISNVQMDSLEPMLGELSIATASLSAPIF
Sbjct: 421 VLGLVHVSSRVRPAESLWALAYGGPMALLPLTISNVQMDSLEPMLGELSIATASLSAPIF 480
Query: 481 RIISLAIQHPGNNEELCRTCSPEILSRVLHYQLQAFPKMEGGEGEAVTDEELVDAIVSLC 540
RIISLAIQHPGNNEELCRTCSPEILSRVLHYQLQAFPKMEGGEGEAVTDEELVDAIVSLC
Sbjct: 481 RIISLAIQHPGNNEELCRTCSPEILSRVLHYQLQAFPKMEGGEGEAVTDEELVDAIVSLC 540
Query: 541 QSQRNNHELKVQLFSTLLLDLKMWSSCTYGLQKKLLSSLADMIFTEAACMRDANALQMLL 600
QSQRNNHELKVQLFSTLLLDLKMWSSCTYGLQKKLLSSLADMIFTEAACMRDANALQMLL
Sbjct: 541 QSQRNNHELKVQLFSTLLLDLKMWSSCTYGLQKKLLSSLADMIFTEAACMRDANALQMLL 600
Query: 601 DSCRRCYWAIREPNSIDNFALTGTKRSLGEINALIDXXXXXXXXXXXXXXXXXXXDDVRC 660
DSCRRCYWAIREPNSIDNFALTGTKRSLGEINALID DDVRC
Sbjct: 601 DSCRRCYWAIREPNSIDNFALTGTKRSLGEINALIDELLVVVELLLGSASSTAASDDVRC 660
Query: 661 LIGFVVDCPQPNQVARVLHLIYRLIVQPNISRANMFAQSFISCGGVDALLVLLQREAKAG 720
LIGFVVDCPQPNQVARVLHLIYRLIVQPNISRANMFAQSFISCGGVDALLVLLQREAKAG
Sbjct: 661 LIGFVVDCPQPNQVARVLHLIYRLIVQPNISRANMFAQSFISCGGVDALLVLLQREAKAG 720
Query: 721 NNSILDNSDALLSENDFLRNDDSDTKAASGEAKSQDDQIQSVELEQHESILHEEHTELGS 780
NNSILDNSDALLSENDFLRNDDSDTKAASGEAKSQDDQIQSVELEQHESILHEEHTELGS
Sbjct: 721 NNSILDNSDALLSENDFLRNDDSDTKAASGEAKSQDDQIQSVELEQHESILHEEHTELGS 780
Query: 781 TSTNDVPCEILGSSIGRKLSSSENQLLKNLGGINFSITADNVRNNVYNVDKGDGIVVGII 840
TSTNDVPCEILGSSIGRKLSSSENQLLKNLGGINFSITADNVRNNVYNVDKGDGIVVGII
Sbjct: 781 TSTNDVPCEILGSSIGRKLSSSENQLLKNLGGINFSITADNVRNNVYNVDKGDGIVVGII 840
Query: 841 HILGALVASGHLKFASRAANPNLPGGLLTTVHEEGNTMSEDRVSXXXXXXXXXXXXXPRR 900
HILGALVASGHLKFASRAANPNLPGGLLTTVHEEGNTMSEDRVS PRR
Sbjct: 841 HILGALVASGHLKFASRAANPNLPGGLLTTVHEEGNTMSEDRVSLLLFALQKAFQAAPRR 900
Query: 901 LMTVNVYMALISAAINVSSVDENLNLYDCGHRFEHIQLLLVLLRSLPYASRSFQSRAIQD 960
LMTVNVYMALISAAINVSSVDENLNLYDCGHRFEHIQLLLVLLRSLPYASRSFQSRAIQD
Sbjct: 901 LMTVNVYMALISAAINVSSVDENLNLYDCGHRFEHIQLLLVLLRSLPYASRSFQSRAIQD 960
Query: 961 LLFLACSHPENRTTMTSISEWPEWISEVLIYNHEMGAKKYADGISIGDIEDLIHNFLIIM 1020
LLFLACSHPENRTTMTSISEWPEWISEVLIYNHEMGAKKYADGISIGDIEDLIHNFLIIM
Sbjct: 961 LLFLACSHPENRTTMTSISEWPEWISEVLIYNHEMGAKKYADGISIGDIEDLIHNFLIIM 1020
Query: 1021 LEHSMRQKDGWKDVEATIHCAEWLSMVGGSSTGDQRIRREESLPILKRRLLGGLLDFSAR 1080
LEHSMRQKDGWKDVEATIHCAEWLSMVGGSSTGDQRIRREESLPILKRRLLGGLLDFSAR
Sbjct: 1021 LEHSMRQKDGWKDVEATIHCAEWLSMVGGSSTGDQRIRREESLPILKRRLLGGLLDFSAR 1080
Query: 1081 ELQVQTXXXXXXXXXXXXXXLSPEEAKTQAENAAHLSVALAENAIVILMLVEDHLRSQGQ 1140
ELQVQT LSPEEAKTQAENAAHLSVALAENAIVILMLVEDHLRSQGQ
Sbjct: 1081 ELQVQTEVIAAAAAGVAAEGLSPEEAKTQAENAAHLSVALAENAIVILMLVEDHLRSQGQ 1140
Query: 1141 HFCTSRSLDXXXXXXXXXXXXXXXXXXXXXXGNEPMDAGTSRRSSLSTDAGGLPLDVLTS 1200
HFCTSRSLD GNEPMDAGTSRRSSLSTDAGGLPLDVLTS
Sbjct: 1141 HFCTSRSLDSAVPSASMVSSAASRSNSLCRSGNEPMDAGTSRRSSLSTDAGGLPLDVLTS 1200
Query: 1201 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAESWKYRSRLWYGVGIPS 1260
MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAESWKYRSRLWYGVGIPS
Sbjct: 1201 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAESWKYRSRLWYGVGIPS 1260
Query: 1261 KSDTFGGGGSGWEFWKSVLEKDSNG 1285
KSDTFGGGGSGWEFWKSVLEKDSNG
Sbjct: 1261 KSDTFGGGGSGWEFWKSVLEKDSNG 1285
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 42,561,508
Number of extensions: 1814521
Number of successful extensions: 4445
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4442
Number of HSP's successfully gapped: 1
Length of query: 1285
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1172
Effective length of database: 11,135,619
Effective search space: 13050945468
Effective search space used: 13050945468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)