BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0553000 Os04g0553000|AK101413
         (344 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0553000  Protein of unknown function DUF140 domain cont...   599   e-172

>Os04g0553000 Protein of unknown function DUF140 domain containing protein
          Length = 344

 Score =  599 bits (1545), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 310/344 (90%), Positives = 310/344 (90%)

Query: 1   MPSAGAGAAFLLRPISATTHPLISLSCTGAGDSANHKSHLLFRLHHSCRRLPVPRLSLTP 60
           MPSAGAGAAFLLRPISATTHPLISLSCTGAGDSANHKSHLLFRLHHSCRRLPVPRLSLTP
Sbjct: 1   MPSAGAGAAFLLRPISATTHPLISLSCTGAGDSANHKSHLLFRLHHSCRRLPVPRLSLTP 60

Query: 61  APTGSNNSPPRLRGVPGAPAPSLLRWSPPRAIWRGLSALLLAGQVFHRVLTGRVHRRNLL 120
           APTGSNNSPPRLRGVPGAPAPSLLRWSPPRAIWRGLSALLLAGQVFHRVLTGRVHRRNLL
Sbjct: 61  APTGSNNSPPRLRGVPGAPAPSLLRWSPPRAIWRGLSALLLAGQVFHRVLTGRVHRRNLL 120

Query: 121 AQLRRVGPGSAGVSLLTAAFVGMAFTIQFVREFTRLGLHRSVGGVLALALSRELSPXXXX 180
           AQLRRVGPGSAGVSLLTAAFVGMAFTIQFVREFTRLGLHRSVGGVLALALSRELSP    
Sbjct: 121 AQLRRVGPGSAGVSLLTAAFVGMAFTIQFVREFTRLGLHRSVGGVLALALSRELSPVVTA 180

Query: 181 XXXXXXXXXXXXXELGTMQVSEQTDTLRVLGAQPVDYLVVPRVVACVLALPVLTXXXXXX 240
                        ELGTMQVSEQTDTLRVLGAQPVDYLVVPRVVACVLALPVLT      
Sbjct: 181 VVAAGRVGSAFAAELGTMQVSEQTDTLRVLGAQPVDYLVVPRVVACVLALPVLTLMSFAL 240

Query: 241 XXXXXXXXXXXIFGVSTSIILESARRALRPWDLISSLLKSQVFGAIIAVVSCAWGVTTHG 300
                      IFGVSTSIILESARRALRPWDLISSLLKSQVFGAIIAVVSCAWGVTTHG
Sbjct: 241 GLASSAFLADSIFGVSTSIILESARRALRPWDLISSLLKSQVFGAIIAVVSCAWGVTTHG 300

Query: 301 GAKGVGESTTSAVVVSLVGIFVADFALSCLFFQGAGDSLKYAMG 344
           GAKGVGESTTSAVVVSLVGIFVADFALSCLFFQGAGDSLKYAMG
Sbjct: 301 GAKGVGESTTSAVVVSLVGIFVADFALSCLFFQGAGDSLKYAMG 344



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,906,182
Number of extensions: 478097
Number of successful extensions: 2459
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2457
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 242
Effective length of database: 11,709,973
Effective search space: 2833813466
Effective search space used: 2833813466
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)