Os04g0553000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF140 domain containing protein.
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Os04g0553000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF140 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.69 | 0.288 | 11 | 1.08 | 0.353 | 0.776 | -0.967 | -0.681 | -0.0591 | 21.8 | 24.8 | 10 | -- | -- |
| 37.81 | 0.289 | 11 | 1.17 | 0.352 | 0.722 | -0.935 | -- | -0.0325 | 21.6 | 24.8 | 9 | -- | -- |
| 40.97 | 0.3 | 11 | 1.19 | 0.36 | 0.756 | -- | -0.0027 | -0.0372 | 22 | 24.8 | 10 | -- | -- |
| 40.97 | 0.3 | 11 | 1.19 | 0.36 | 0.756 | -- | -- | -0.0371 | 22 | 24.8 | 10 | -- | -- |
| 47.42 | 0.321 | 11 | 1.25 | -- | 0.594 | -- | 0.381 | -0.0301 | -- | 23.25 | 153 | -- | -- |
| 47.58 | 0.323 | 11 | 1.28 | 0.379 | -- | -0.908 | -- | 0.0312 | 19.7 | -- | -- | -- | -- |
| 49.59 | 0.33 | 11 | 1.31 | 0.391 | -- | -- | -- | 0.0316 | 18.9 | -- | -- | -- | -- |
| 47.41 | 0.321 | 11 | 1.19 | -- | 0.617 | -- | -- | -0.0505 | -- | 23.44 | 153 | -- | -- |
| 74.84 | 0.403 | 11.1 | -- | 0.438 | 1.08 | -- | -- | -0.26 | 23.2 | 22.6 | 12 | -- | -- |
| 57.61 | 0.355 | 11 | 1.3 | -- | -- | -- | -- | 0.0243 | -- | -- | -- | -- | -- |
| 94.6 | 0.455 | 11 | -- | 0.377 | -- | -- | -- | -0.114 | 19.1 | -- | -- | -- | -- |
| 77.34 | 0.41 | 11.1 | -- | -- | 1.2 | -- | -- | -0.267 | -- | 13.49 | 655 | -- | -- |
| 102.1 | 0.472 | 11 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.82 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 3 | 35.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 16 | 36.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 26 | 36.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 34 | 36.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 86 | 37.00 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 97 | 37.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 101 | 37.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 106 | 37.16 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 12 |
| 108 | 37.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 113 | 37.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 141 | 37.36 | temperature | 25 | 90 | > th | dose independent | sin | 2 | NA |
| 146 | 37.37 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 150 | 37.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 153 | 37.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 167 | 37.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 186 | 37.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 240 | 37.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 248 | 37.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 249 | 37.70 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 261 | 37.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 339 | 37.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 342 | 37.86 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 346 | 37.87 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 426 | 38.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 455 | 38.14 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 479 | 38.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 548 | 38.34 | temperature | 25 | 90 | < th | dose independent | sin | 3 | NA |
| 549 | 38.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 648 | 38.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 662 | 38.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 683 | 38.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 754 | 38.72 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 20 |
| 780 | 38.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 920 | 38.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 966 | 39.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |