BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0551700 Os04g0551700|AK068663
         (215 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0551700  PAP fibrillin family protein                        383   e-107

>Os04g0551700 PAP fibrillin family protein
          Length = 215

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/215 (90%), Positives = 194/215 (90%)

Query: 1   HAKILAPIXXXXXXXXXXXXXXXXXXXXXFPSRRSRPPPEKDELLRLIADQRRGLDTQSD 60
           HAKILAPI                     FPSRRSRPPPEKDELLRLIADQRRGLDTQSD
Sbjct: 1   HAKILAPIPRGNRRLAPAPPAAGGFLRALFPSRRSRPPPEKDELLRLIADQRRGLDTQSD 60

Query: 61  PSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGD 120
           PSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGD
Sbjct: 61  PSRLADIVSCIDALAAAAPGSDTVSDADKLSGTWRLLWTTEHEQLFIVRNAPFFRTAAGD 120

Query: 121 VFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFG 180
           VFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFG
Sbjct: 121 VFQVIDVPGGALNNVITFPPSGAFVVNGSIEIQPPQRVNFRFTRAMLRGSNWEVPFPPFG 180

Query: 181 KGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG 215
           KGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG
Sbjct: 181 KGWFDTVYLDDDIRVAKDIRGDYLVVERAPYSWNG 215



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,220,986
Number of extensions: 366712
Number of successful extensions: 834
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)