Os04g0551700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
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Os04g0551700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP fibrillin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.66 | 0.476 | 11.5 | -1.62 | 0.892 | -1.5 | 0.387 | -0.936 | -0.114 | 23.9 | 26.29 | 88 | -- | -- |
| 103.67 | 0.474 | 11.5 | -1.74 | 0.882 | -1.45 | 0.19 | -- | -0.151 | 0.0017 | 26.88 | 109 | -- | -- |
| 103.14 | 0.473 | 11.5 | -1.68 | 0.883 | -1.46 | -- | -0.647 | -0.121 | 23.7 | 26.28 | 88 | -- | -- |
| 103.63 | 0.474 | 11.5 | -1.79 | 0.897 | -1.43 | -- | -- | -0.148 | 23.9 | 26.9 | 86 | -- | -- |
| 125.25 | 0.521 | 11.5 | -1.98 | -- | -1.51 | -- | -0.0213 | -0.155 | -- | 28.62 | 821 | -- | -- |
| 132.46 | 0.54 | 11.4 | -1.44 | 0.665 | -- | -0.173 | -- | 0.167 | 22.3 | -- | -- | -- | -- |
| 132.57 | 0.539 | 11.4 | -1.43 | 0.665 | -- | -- | -- | 0.167 | 22.3 | -- | -- | -- | -- |
| 124.33 | 0.519 | 11.5 | -1.83 | -- | -1.46 | -- | -- | -0.131 | -- | 29.5 | 843 | -- | -- |
| 178.18 | 0.625 | 11.4 | -- | 0.769 | -0.704 | -- | -- | 0.195 | 22.8 | 25.7 | 4 | -- | -- |
| 159.57 | 0.59 | 11.4 | -1.42 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 186.4 | 0.639 | 11.4 | -- | 0.658 | -- | -- | -- | 0.326 | 22.2 | -- | -- | -- | -- |
| 202.73 | 0.663 | 11.4 | -- | -- | -0.73 | -- | -- | 0.203 | -- | 29.6 | 787 | -- | -- |
| 212.65 | 0.681 | 11.4 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 13 | 101.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 15 | 101.26 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 16 | 101.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 22 | 101.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 24 | 101.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 44 | 102.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 49 | 102.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 62 | 102.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 101 | 103.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 107 | 103.33 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 111 | 103.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 120 | 103.62 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 122 | 103.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 132 | 103.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 133 | 103.84 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 141 | 103.91 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 148 | 103.96 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 150 | 103.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 154 | 104.00 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 158 | 104.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 164 | 104.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 182 | 104.28 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 219 | 104.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 223 | 104.60 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 236 | 104.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 253 | 104.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 301 | 105.38 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 406 | 106.31 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 450 | 106.68 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 541 | 107.29 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 21 |
| 632 | 107.86 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 664 | 108.02 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 680 | 108.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 725 | 108.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 764 | 108.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 772 | 108.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 833 | 108.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 836 | 108.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 894 | 109.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 13 |