BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0531800 Os04g0531800|AK121355
         (102 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0531800  Conserved hypothetical protein                      134   2e-32
Os09g0358500                                                       78   1e-15

>Os04g0531800 Conserved hypothetical protein
          Length = 102

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 73/102 (71%)

Query: 1   MPRHCAAVESHLQTDVVSAHHSDRIDRLAMPPTSHQAQIAHRHAPSIPHPSCXXXXXXXX 60
           MPRHCAAVESHLQTDVVSAHHSDRIDRLAMPPTSHQAQIAHRHAPSIPHPSC        
Sbjct: 1   MPRHCAAVESHLQTDVVSAHHSDRIDRLAMPPTSHQAQIAHRHAPSIPHPSCRRRPAIAP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXQDSSPLAPFCTAATGALSTTT 102
                                QDSSPLAPFCTAATGALSTTT
Sbjct: 61  PSIPASRLTAPLAPARILRRRQDSSPLAPFCTAATGALSTTT 102



>Os09g0358500 
          Length = 93

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 44/73 (60%)

Query: 30  MPPTSHQAQIAHRHAPSIPHPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDSSPLAP 89
           MPPTSHQAQIAHRHAPSIPHPSC                             QDSSPLAP
Sbjct: 1   MPPTSHQAQIAHRHAPSIPHPSCRRRPAIAPPSIPASRLTAPLAPARILRRRQDSSPLAP 60

Query: 90  FCTAATGALSTTT 102
           FCTAATGALSTTT
Sbjct: 61  FCTAATGALSTTT 73



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.124    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,850,139
Number of extensions: 80454
Number of successful extensions: 264
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)