Os04g0531800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0531800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 152.09 | 0.579 | 7.01 | -0.634 | 1.47 | -0.996 | -0.604 | -4.59 | -0.366 | 12.4 | 1.02 | 4270 | -- | -- |
| 166.56 | 0.601 | 6.91 | 0.34 | 1.47 | -0.686 | -0.726 | -- | -0.176 | 12.6 | 20.05 | 2810 | -- | -- |
| 152.93 | 0.576 | 7.01 | -0.683 | 1.49 | -0.894 | -- | -4.43 | -0.376 | 12.4 | 1.258 | 4294 | -- | -- |
| 165.83 | 0.6 | 6.91 | 0.318 | 1.48 | -0.706 | -- | -- | -0.174 | 12.4 | 20.01 | 2801 | -- | -- |
| 215.58 | 0.688 | 6.99 | 0.137 | -- | 1.05 | -- | -0.238 | -0.366 | -- | 1.258 | 4294 | -- | -- |
| 182.22 | 0.633 | 6.95 | 0.207 | 1.58 | -- | -0.224 | -- | -0.307 | 12.4 | -- | -- | -- | -- |
| 182.43 | 0.633 | 6.95 | 0.199 | 1.58 | -- | -- | -- | -0.308 | 12.4 | -- | -- | -- | -- |
| 215.95 | 0.687 | 6.98 | 0.139 | -- | 1.05 | -- | -- | -0.365 | -- | 1.258 | 4294 | -- | -- |
| 166.99 | 0.602 | 6.92 | -- | 1.49 | -0.63 | -- | -- | -0.19 | 12.4 | 31.72 | 2924 | -- | -- |
| 340.01 | 0.862 | 6.98 | 0.145 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 183.47 | 0.634 | 6.95 | -- | 1.58 | -- | -- | -- | -0.331 | 12.3 | -- | -- | -- | -- |
| 216.46 | 0.687 | 6.99 | -- | -- | 1.05 | -- | -- | -0.381 | -- | 1.258 | 4294 | -- | -- |
| 340.57 | 0.861 | 6.98 | -- | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 146.49 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 3 | 146.51 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 4 | 146.53 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 7 | 146.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 18 |
| 10 | 146.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 17 |
| 13 | 146.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 16 | 146.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 12 |
| 18 | 146.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 10 |
| 26 | 146.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 57 | 146.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 90 | 147.17 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 93 | 147.20 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 110 | 147.32 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 133 | 147.47 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 142 | 147.54 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 148 | 147.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 149 | 147.57 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 202 | 147.85 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 207 | 147.91 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 215 | 148.02 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 216 | 148.06 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 221 | 148.09 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 227 | 148.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 230 | 148.21 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 233 | 148.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 258 | 148.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 262 | 148.49 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 274 | 148.66 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 275 | 148.69 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 278 | 148.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 285 | 148.78 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 286 | 148.78 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 288 | 148.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 312 | 148.97 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 17 |
| 313 | 148.97 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 17 |
| 324 | 149.01 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 19 |
| 356 | 149.24 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 461 | 149.86 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 464 | 149.87 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 475 | 149.94 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 492 | 150.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 21 | 20 |
| 494 | 150.02 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 530 | 150.14 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 19 |
| 548 | 150.18 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 17 |
| 549 | 150.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 558 | 150.22 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 559 | 150.22 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 570 | 150.23 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 12 |
| 600 | 150.33 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 603 | 150.35 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 611 | 150.37 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 12 |
| 620 | 150.40 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 628 | 150.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 633 | 150.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 636 | 150.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 640 | 150.45 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 12 |
| 653 | 150.46 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 655 | 150.47 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 15 |
| 661 | 150.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 663 | 150.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 667 | 150.52 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 670 | 150.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 681 | 150.55 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 690 | 150.60 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 713 | 150.69 | radiation | 1.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 728 | 150.74 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 732 | 150.75 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 755 | 150.83 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 756 | 150.83 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 764 | 150.85 | radiation | 1.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 765 | 150.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 787 | 150.90 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 799 | 150.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 834 | 151.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 839 | 151.05 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 855 | 151.08 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 858 | 151.08 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 869 | 151.11 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 872 | 151.11 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 883 | 151.13 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 884 | 151.14 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 907 | 151.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 923 | 151.23 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 926 | 151.24 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 931 | 151.24 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 933 | 151.25 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 954 | 151.29 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 994 | 151.35 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |