BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0528400 Os04g0528400|AK101159
         (326 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0528400  Similar to ABC transporter                          573   e-164

>Os04g0528400 Similar to ABC transporter
          Length = 326

 Score =  573 bits (1478), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 287/326 (88%), Positives = 287/326 (88%)

Query: 1   MKFKAFFTDDGIALLDKRFLPAMDKVGRLCHVYLTPTHAMLLHNLLXXXXXXXXXXXXQC 60
           MKFKAFFTDDGIALLDKRFLPAMDKVGRLCHVYLTPTHAMLLHNLL            QC
Sbjct: 1   MKFKAFFTDDGIALLDKRFLPAMDKVGRLCHVYLTPTHAMLLHNLLGPTGTGPDGGGPQC 60

Query: 61  VAQFAKDLLFREYSVSSRNGNRVAFAVDXXXXXXXXXXXXXXXXXXXXXXXXXXXIQVKL 120
           VAQFAKDLLFREYSVSSRNGNRVAFAVD                           IQVKL
Sbjct: 61  VAQFAKDLLFREYSVSSRNGNRVAFAVDVALLHRALRSALAVHAQSPAAGDASAAIQVKL 120

Query: 121 VNKLPAGSRSASPFLTFETKGARSAVVQDVPISRPLSRSDVERLQAALDSAQELPQTLVQ 180
           VNKLPAGSRSASPFLTFETKGARSAVVQDVPISRPLSRSDVERLQAALDSAQELPQTLVQ
Sbjct: 121 VNKLPAGSRSASPFLTFETKGARSAVVQDVPISRPLSRSDVERLQAALDSAQELPQTLVQ 180

Query: 181 VPDLPQLQSLVDRLKNVGDLLTVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPV 240
           VPDLPQLQSLVDRLKNVGDLLTVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPV
Sbjct: 181 VPDLPQLQSLVDRLKNVGDLLTVAVTQYGDLHLHVATSLVTVGSEFRKLRILGVRATAPV 240

Query: 241 GDQNLSASTRTNMAIERGEALSVQVNMKHLAKSLQCHLAKPDCTFYGISPGGACLTVIFQ 300
           GDQNLSASTRTNMAIERGEALSVQVNMKHLAKSLQCHLAKPDCTFYGISPGGACLTVIFQ
Sbjct: 241 GDQNLSASTRTNMAIERGEALSVQVNMKHLAKSLQCHLAKPDCTFYGISPGGACLTVIFQ 300

Query: 301 YFIPGTRLTDKSISFYCRLPVLDPGS 326
           YFIPGTRLTDKSISFYCRLPVLDPGS
Sbjct: 301 YFIPGTRLTDKSISFYCRLPVLDPGS 326



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,848,091
Number of extensions: 299399
Number of successful extensions: 642
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)