BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0525000 Os04g0525000|AK067753
         (262 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0525000  Conserved hypothetical protein                      423   e-119

>Os04g0525000 Conserved hypothetical protein
          Length = 262

 Score =  423 bits (1087), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/262 (80%), Positives = 212/262 (80%)

Query: 1   MARACSPALRXXXXXXXXXXXXXXSCRTHSAGARCRGFAAAHSQPPAAGRPDEPAAEPSP 60
           MARACSPALR              SCRTHSAGARCRGFAAAHSQPPAAGRPDEPAAEPSP
Sbjct: 1   MARACSPALRLQLPPNPPITPQLPSCRTHSAGARCRGFAAAHSQPPAAGRPDEPAAEPSP 60

Query: 61  KQPEIAQTQNLXXXXXXXXXXXQSLVSVGTSCGGGDQWSSDFDLTLRQLHLDDLIEDGQN 120
           KQPEIAQTQNL           QSLVSVGTSCGGGDQWSSDFDLTLRQLHLDDLIEDGQN
Sbjct: 61  KQPEIAQTQNLRRSRRRGPGSRQSLVSVGTSCGGGDQWSSDFDLTLRQLHLDDLIEDGQN 120

Query: 121 DDADVLVHLLVQQHTQFGMSIKGRVVTSFSKICDSCSSPYCAKIDEQFNLTVLSSTRKEQ 180
           DDADVLVHLLVQQHTQFGMSIKGRVVTSFSKICDSCSSPYCAKIDEQFNLTVLSSTRKEQ
Sbjct: 121 DDADVLVHLLVQQHTQFGMSIKGRVVTSFSKICDSCSSPYCAKIDEQFNLTVLSSTRKEQ 180

Query: 181 SEMPDIGDSDPSVIYVRPGVEVDLDSVIQETIRLTXXXXXXXXXXXXXXTVVWQYGGNQK 240
           SEMPDIGDSDPSVIYVRPGVEVDLDSVIQETIRLT              TVVWQYGGNQK
Sbjct: 181 SEMPDIGDSDPSVIYVRPGVEVDLDSVIQETIRLTASAKSSCSEACEKSTVVWQYGGNQK 240

Query: 241 KRYSQRWSXXXXXXXXXXXAAN 262
           KRYSQRWS           AAN
Sbjct: 241 KRYSQRWSKLLDLKKTLDKAAN 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,202,246
Number of extensions: 308573
Number of successful extensions: 1539
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)