Os04g0525000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0525000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.08 | 0.282 | 12.6 | -1.87 | 0.607 | -1.5 | 0.566 | 2.87 | -0.932 | 21.9 | 0.02233 | 1631 | -- | -- |
| 37.14 | 0.284 | 12.6 | -1.95 | 0.606 | -0.705 | 0.618 | -- | -0.921 | 22 | 0.2033 | 1630 | -- | -- |
| 37.25 | 0.284 | 12.6 | -1.89 | 0.609 | -1.53 | -- | 3 | -0.931 | 21.7 | 0.1921 | 1629 | -- | -- |
| 38.36 | 0.288 | 12.6 | -1.97 | 0.606 | -0.69 | -- | -- | -0.915 | 21.7 | 0.4642 | 1621 | -- | -- |
| 59.14 | 0.358 | 12.6 | -1.88 | -- | -1.48 | -- | 2.97 | -0.924 | -- | 0.5 | 1617 | -- | -- |
| 42.38 | 0.305 | 12.6 | -2.1 | 0.594 | -- | 0.537 | -- | -0.882 | 22 | -- | -- | -- | -- |
| 43.43 | 0.309 | 12.6 | -2.12 | 0.596 | -- | -- | -- | -0.882 | 21.7 | -- | -- | -- | -- |
| 59.97 | 0.361 | 12.6 | -1.98 | -- | -0.695 | -- | -- | -0.913 | -- | 0.05765 | 1382 | -- | -- |
| 89.73 | 0.441 | 12.6 | -- | 0.548 | -1.16 | -- | -- | -0.9 | 21.3 | 1 | 47520 | -- | -- |
| 64.52 | 0.375 | 12.6 | -2.12 | -- | -- | -- | -- | -0.882 | -- | -- | -- | -- | -- |
| 162.11 | 0.596 | 12.6 | -- | 0.592 | -- | -- | -- | -0.645 | 21.4 | -- | -- | -- | -- |
| 108.06 | 0.484 | 12.6 | -- | -- | -1.1 | -- | -- | -0.929 | -- | 1.847 | 47520 | -- | -- |
| 182.69 | 0.631 | 12.6 | -- | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.77 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 2 | 34.78 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 8 | 35.21 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 10 | 35.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 12 | 35.36 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 16 | 35.48 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 19 | 35.49 | humidity | 90.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 21 | 35.51 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 26 | 35.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 40 | 35.64 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 49 | 35.72 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 51 | 35.72 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 72 | 35.82 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 81 | 35.88 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 94 | 35.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 133 | 36.02 | humidity | 90.0 | 720 | > th | dose independent | rect. | 7 | 18 |
| 140 | 36.04 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 155 | 36.07 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 22 | NA |
| 156 | 36.07 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 157 | 36.07 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 162 | 36.07 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 163 | 36.07 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 165 | 36.07 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 200 | 36.12 | humidity | 90.0 | 720 | < th | dose independent | sin | 21 | NA |
| 207 | 36.13 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 239 | 36.17 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 244 | 36.17 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 267 | 36.22 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 23 | NA |
| 312 | 36.28 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 315 | 36.29 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 320 | 36.29 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 346 | 36.34 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 353 | 36.34 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 375 | 36.37 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 381 | 36.37 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 416 | 36.39 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 426 | 36.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 442 | 36.41 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 451 | 36.42 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 20 |
| 464 | 36.43 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 473 | 36.43 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 481 | 36.44 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 491 | 36.45 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 576 | 36.52 | humidity | 90.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 580 | 36.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 583 | 36.52 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 617 | 36.54 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 619 | 36.55 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 659 | 36.58 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 22 |
| 691 | 36.60 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 22 |
| 701 | 36.61 | precipitation | 0.1 | 720 | < th | dose independent | sin | 4 | NA |
| 705 | 36.61 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 4 | NA |
| 719 | 36.62 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 729 | 36.62 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 731 | 36.62 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 734 | 36.63 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 772 | 36.64 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 787 | 36.65 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 790 | 36.65 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 813 | 36.66 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 844 | 36.67 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 872 | 36.68 | precipitation | 0.1 | 1440 | > th | dose independent | no | NA | NA |
| 873 | 36.68 | precipitation | 0.1 | 1440 | < th | dose independent | no | NA | NA |
| 888 | 36.68 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 890 | 36.68 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 891 | 36.68 | precipitation | 0.1 | 1440 | < th | dose dependent | no | NA | NA |
| 906 | 36.68 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 910 | 36.69 | humidity | 90.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 915 | 36.69 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 927 | 36.69 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 937 | 36.70 | humidity | 90.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 943 | 36.70 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 1 | 23 |