BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0524800 Os04g0524800|AK064753
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0524800  Conserved hypothetical protein                      185   5e-48

>Os04g0524800 Conserved hypothetical protein
          Length = 121

 Score =  185 bits (470), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MTVFSWRVKGCLRKPTLSMAAVQRRTRKKPRRLAETLSEGMTPVVRDSFMTMMLNMMERR 60
          MTVFSWRVKGCLRKPTLSMAAVQRRTRKKPRRLAETLSEGMTPVVRDSFMTMMLNMMERR
Sbjct: 1  MTVFSWRVKGCLRKPTLSMAAVQRRTRKKPRRLAETLSEGMTPVVRDSFMTMMLNMMERR 60

Query: 61 NPTTKARTVSCSLHDGTGLSANACSTDGAT 90
          NPTTKARTVSCSLHDGTGLSANACSTDGAT
Sbjct: 61 NPTTKARTVSCSLHDGTGLSANACSTDGAT 90



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.126    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,058,184
Number of extensions: 92152
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)