Os04g0524800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0524800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.02 | 0.741 | 2.94 | -0.0737 | 0.0582 | -0.648 | -1.15 | -3.87 | -0.00131 | 15.7 | 43.53 | 167 | -- | -- |
| 267.38 | 0.762 | 2.93 | -0.0563 | 0.128 | -0.415 | -0.353 | -- | 0.0236 | 15.4 | 43.53 | 157 | -- | -- |
| 252.42 | 0.74 | 2.95 | -0.0815 | 0.0691 | -0.7 | -- | -3.52 | 0.00153 | 15.1 | 44.33 | 156 | -- | -- |
| 267.24 | 0.761 | 2.93 | -0.0597 | 0.0753 | -0.455 | -- | -- | 0.0124 | 15.3 | 43.53 | 158 | -- | -- |
| 252.5 | 0.74 | 2.94 | -0.091 | -- | -0.701 | -- | -3.42 | -0.00671 | -- | 43.52 | 157 | -- | -- |
| 270.19 | 0.771 | 2.92 | -0.101 | 0.201 | -- | 0.0575 | -- | 0.0237 | 13.4 | -- | -- | -- | -- |
| 270.19 | 0.77 | 2.92 | -0.0985 | 0.201 | -- | -- | -- | 0.0242 | 13.6 | -- | -- | -- | -- |
| 267.45 | 0.762 | 2.93 | -0.0834 | -- | -0.518 | -- | -- | -0.00208 | -- | 43.53 | 157 | -- | -- |
| 267.34 | 0.762 | 2.93 | -- | 0.0736 | -0.462 | -- | -- | 0.00976 | 14.2 | 43.52 | 157 | -- | -- |
| 272.67 | 0.772 | 2.93 | -0.107 | -- | -- | -- | -- | 0.0198 | -- | -- | -- | -- | -- |
| 270.45 | 0.769 | 2.92 | -- | 0.203 | -- | -- | -- | 0.0352 | 13.6 | -- | -- | -- | -- |
| 267.63 | 0.762 | 2.93 | -- | -- | -0.528 | -- | -- | 0.00758 | -- | 43.52 | 157 | -- | -- |
| 272.97 | 0.771 | 2.92 | -- | -- | -- | -- | -- | 0.0316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.20 | radiation | 1 | 90 | < th | dose independent | rect. | 8 | 6 |
| 2 | 241.20 | radiation | 1 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 9 | 242.91 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 3 |
| 10 | 242.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 11 | 3 |
| 29 | 243.43 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 39 | 243.43 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 49 | 243.47 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 50 | 243.92 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 1 |
| 85 | 248.47 | humidity | 90 | 90 | > th | dose dependent | rect. | 20 | 2 |
| 89 | 248.53 | radiation | 40 | 90 | > th | dose independent | rect. | 10 | 4 |
| 97 | 249.13 | radiation | 40 | 90 | > th | dose independent | rect. | 10 | 23 |
| 116 | 249.25 | radiation | 30 | 90 | > th | dose dependent | rect. | 10 | 4 |
| 124 | 249.85 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 21 |
| 125 | 249.86 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 4 |
| 145 | 250.12 | radiation | 30 | 90 | > th | dose dependent | rect. | 10 | 23 |
| 173 | 251.14 | radiation | 30 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 194 | 251.25 | radiation | 40 | 270 | > th | dose independent | sin | 9 | NA |
| 282 | 252.00 | humidity | 90 | 90 | > th | dose independent | rect. | 21 | 1 |
| 283 | 252.01 | humidity | 80 | 10 | > th | dose independent | rect. | 14 | 1 |
| 291 | 252.36 | humidity | 90 | 10 | > th | dose independent | rect. | 21 | 1 |
| 304 | 252.59 | radiation | 40 | 90 | > th | dose independent | sin | 19 | NA |
| 326 | 252.68 | radiation | 40 | 90 | < th | dose independent | sin | 21 | NA |
| 339 | 252.95 | radiation | 40 | 270 | < th | dose independent | sin | 9 | NA |
| 345 | 253.10 | radiation | 30 | 270 | > th | dose dependent | sin | 9 | NA |
| 366 | 253.15 | radiation | 30 | 90 | > th | dose dependent | sin | 21 | NA |
| 549 | 253.91 | radiation | 40 | 90 | > th | dose dependent | sin | 3 | NA |
| 567 | 254.18 | radiation | 40 | 90 | < th | dose independent | rect. | 7 | 12 |
| 660 | 254.28 | radiation | 40 | 90 | > th | dose dependent | no | NA | NA |
| 973 | 254.42 | radiation | 40 | 90 | < th | dose independent | no | NA | NA |
| 983 | 254.57 | radiation | 40 | 90 | > th | dose independent | no | NA | NA |