BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0516900 Os04g0516900|AK108714
         (493 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0516900  Conserved hypothetical protein                      808   0.0  

>Os04g0516900 Conserved hypothetical protein
          Length = 493

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/493 (83%), Positives = 414/493 (83%)

Query: 1   MAVPASVVVASCLCVGASACVSSGLAFCATFAVSLPFVARELSPEHIDGVFAAVDACLQK 60
           MAVPASVVVASCLCVGASACVSSGLAFCATFAVSLPFVARELSPEHIDGVFAAVDACLQK
Sbjct: 1   MAVPASVVVASCLCVGASACVSSGLAFCATFAVSLPFVARELSPEHIDGVFAAVDACLQK 60

Query: 61  GACYARAAVEAETRRLRDPARCHPALAFLYXXXXXXXXXXXXLVTDAVDRLETRAAESKW 120
           GACYARAAVEAETRRLRDPARCHPALAFLY            LVTDAVDRLETRAAESKW
Sbjct: 61  GACYARAAVEAETRRLRDPARCHPALAFLYARAEGGARRARALVTDAVDRLETRAAESKW 120

Query: 121 RDMTDASAAALRWLRLIAGAINLAVAVLITMXXXXXXXXXXXXXXXXIRTTPNSEAMTTS 180
           RDMTDASAAALRWLRLIAGAINLAVAVLITM                IRTTPNSEAMTTS
Sbjct: 121 RDMTDASAAALRWLRLIAGAINLAVAVLITMSERRAASGLRRSGAHGIRTTPNSEAMTTS 180

Query: 181 SSKLDATLFVVWITATFTYSTPVFFQCAVTSGMASLXXXXXXXXXXXXXXLMQANKVHLW 240
           SSKLDATLFVVWITATFTYSTPVFFQCAVTSGMASL              LMQANKVHLW
Sbjct: 181 SSKLDATLFVVWITATFTYSTPVFFQCAVTSGMASLAACFACFATMCCFALMQANKVHLW 240

Query: 241 SSRDAAGRNAVMAEVPHAWGLLWSEITLVTYLVDACLLCITLDSRASRPVALAFLAACNL 300
           SSRDAAGRNAVMAEVPHAWGLLWSEITLVTYLVDACLLCITLDSRASRPVALAFLAACNL
Sbjct: 241 SSRDAAGRNAVMAEVPHAWGLLWSEITLVTYLVDACLLCITLDSRASRPVALAFLAACNL 300

Query: 301 ATLKVASQVEAIGSAGVIRRRGHAVAVCAMGIAKVFVVCFVLDFRLGALRFAFLCSVIAF 360
           ATLKVASQVEAIGSAGVIRRRGHAVAVCAMGIAKVFVVCFVLDFRLGALRFAFLCSVIAF
Sbjct: 301 ATLKVASQVEAIGSAGVIRRRGHAVAVCAMGIAKVFVVCFVLDFRLGALRFAFLCSVIAF 360

Query: 361 LLNKAAGSLPDVSTPXXXXXXXXXXXXXXELLPEYVSNSEELSNHATFNHKVEEDSSSPA 420
           LLNKAAGSLPDVSTP              ELLPEYVSNSEELSNHATFNHKVEEDSSSPA
Sbjct: 361 LLNKAAGSLPDVSTPVDASAGDADVAGDVELLPEYVSNSEELSNHATFNHKVEEDSSSPA 420

Query: 421 AGDRENEHDSSNSATIDGGEDDTTTKEYFXXXXXXXXXXXXXXXXXXXXXXXWNLVEIDP 480
           AGDRENEHDSSNSATIDGGEDDTTTKEYF                       WNLVEIDP
Sbjct: 421 AGDRENEHDSSNSATIDGGEDDTTTKEYFDGSDSEEQRQEEEEEDYGGGMDEWNLVEIDP 480

Query: 481 VMPINVNGGAKRW 493
           VMPINVNGGAKRW
Sbjct: 481 VMPINVNGGAKRW 493



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,303,989
Number of extensions: 428315
Number of successful extensions: 1566
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1564
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 388
Effective length of database: 11,553,331
Effective search space: 4482692428
Effective search space used: 4482692428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)