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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0516900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0285) R2 : 8.89e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0121 (0.06) R2dN8 : 0.000115 R2N8 : 8.89e-05
σ : 0.537
deviance : 132.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
124.05 0.523 2.96 -0.0889 0.169 -0.678 -0.301 5.78 0.0114 5.52 46.88 952 -- --
126.52 0.524 2.98 -0.073 0.159 1.47 -0.386 -- 0.00824 5.75 38.79 609 -- --
124.24 0.519 2.96 -0.0893 0.167 -0.754 -- 5.92 0.0113 5.29 47.1 952 -- --
126.72 0.524 2.98 -0.0763 0.163 1.44 -- -- 0.012 5.11 40.91 588 -- --
125.7 0.522 2.96 -0.0892 -- -0.351 -- 4.82 0.00989 -- 47.21 952 -- --
130.78 0.536 2.98 -0.0324 0.163 -- -0.321 -- 0.00364 5.54 -- -- -- --
130.89 0.536 2.98 -0.0349 0.166 -- -- -- 0.00454 4.45 -- -- -- --
126.27 0.523 2.98 -0.141 -- 1.53 -- -- 0.0198 -- 46.66 1457 -- --
126.89 0.525 2.98 -- 0.163 1.44 -- -- 0.0138 4.94 40.91 589 -- --
132.38 0.538 2.98 -0.0284 -- -- -- -- 0.00894 -- -- -- -- --
130.93 0.535 2.98 -- 0.166 -- -- -- 0.00843 4.46 -- -- -- --
126.75 0.524 2.98 -- -- 1.46 -- -- 0.0325 -- 46.38 1519 -- --
132.4 0.537 2.98 -- -- -- -- -- 0.0121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.41 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 119.48 atmosphere 1005.0 10 > th dose dependent rect. 2 3
7 120.04 atmosphere 1005.0 270 > th dose dependent rect. 23 5
9 120.59 radiation 40.0 270 > th dose independent rect. 15 1
26 120.59 radiation 40.0 270 > th dose dependent rect. 15 1
43 120.99 wind 1.0 270 < th dose independent rect. 14 1
45 121.56 atmosphere 1015.0 90 < th dose independent rect. 3 23
47 121.69 wind 1.0 270 < th dose dependent rect. 14 1
49 121.98 atmosphere 1015.0 10 < th dose independent rect. 4 22
50 122.01 temperature 25.0 270 > th dose independent rect. 1 3
52 122.05 temperature 25.0 270 > th dose dependent rect. 1 4
53 122.12 temperature 25.0 270 > th dose dependent rect. 2 2
66 122.65 temperature 25.0 90 > th dose independent rect. 4 1
77 122.81 temperature 25.0 90 > th dose dependent rect. 4 1
80 122.84 temperature 20.0 90 < th dose independent rect. 9 2
81 122.85 wind 3.0 90 < th dose dependent rect. 2 1
82 122.85 temperature 20.0 10 < th dose dependent rect. 9 3
88 122.92 humidity 90.0 10 < th dose independent rect. 4 1
91 123.04 temperature 15.0 720 < th dose dependent rect. 23 2
103 123.06 temperature 15.0 720 < th dose independent rect. 23 2
132 123.51 temperature 20.0 10 < th dose independent rect. 9 3
136 123.56 temperature 20.0 90 < th dose dependent rect. 8 3
139 123.61 atmosphere 1005.0 10 > th dose dependent rect. 23 6
142 123.66 temperature 20.0 90 < th dose independent rect. 2 2
144 123.67 atmosphere 1005.0 720 > th dose independent rect. 17 1
150 123.76 atmosphere 1015.0 720 < th dose independent rect. 21 9
151 123.76 atmosphere 1005.0 10 > th dose dependent rect. 17 12
155 123.79 wind 7.0 1440 < th dose independent rect. 5 1
157 123.79 temperature 10.0 1440 > th dose independent rect. 5 1
160 123.79 temperature 30.0 1440 < th dose independent rect. 5 1
164 123.79 humidity 50.0 1440 > th dose independent rect. 5 1
173 123.79 atmosphere 995.0 1440 > th dose independent rect. 5 1
174 123.79 atmosphere 1015.0 1440 < th dose independent rect. 5 1
175 123.79 radiation 20.0 1440 < th dose independent rect. 5 1
184 123.79 temperature 10.0 1440 > th dose independent rect. 6 23
197 123.94 temperature 20.0 90 < th dose dependent rect. 8 1
244 124.01 wind 1.0 30 > th dose independent rect. 4 1
247 124.04 temperature 15.0 720 < th dose independent rect. 1 1
250 124.04 temperature 15.0 720 < th dose dependent rect. 1 1
257 124.07 temperature 15.0 720 < th dose dependent rect. 23 12
269 124.09 atmosphere 1015.0 720 < th dose independent rect. 18 15
276 124.15 wind 3.0 90 < th dose independent rect. 2 1
281 124.18 atmosphere 1010.0 270 > th dose dependent rect. 5 3
297 124.26 wind 1.0 720 > th dose independent rect. 8 8
308 124.28 wind 1.0 30 > th dose dependent rect. 4 1
344 124.41 atmosphere 1015.0 720 < th dose independent rect. 18 7
345 124.41 temperature 30.0 90 < th dose dependent rect. 2 1
354 124.46 humidity 50.0 1440 < th dose dependent rect. 16 22
357 124.48 humidity 50.0 1440 < th dose independent rect. 11 1
360 124.49 atmosphere 1005.0 10 > th dose dependent rect. 20 9
361 124.50 atmosphere 1010.0 10 > th dose dependent rect. 10 1
400 124.57 temperature 25.0 10 > th dose independent rect. 2 3
406 124.58 atmosphere 1005.0 30 > th dose independent rect. 4 1
408 124.58 atmosphere 1015.0 270 < th dose independent rect. 1 23
410 124.58 humidity 50.0 1440 < th dose dependent rect. 11 2
447 124.60 atmosphere 1005.0 90 > th dose independent rect. 2 1
452 124.63 wind 5.0 30 < th dose independent rect. 4 1
471 124.66 temperature 10.0 30 > th dose independent rect. 4 1
473 124.66 temperature 30.0 30 < th dose independent rect. 4 1
474 124.66 humidity 50.0 30 > th dose independent rect. 4 1
478 124.66 atmosphere 1010.0 30 < th dose independent rect. 4 1
480 124.66 radiation 1.0 30 < th dose independent rect. 4 1
486 124.66 atmosphere 1015.0 720 < th dose independent rect. 18 22
487 124.66 temperature 10.0 30 > th dose independent rect. 5 23
489 124.66 radiation 10.0 30 < th dose dependent rect. 4 1
513 124.68 precipitation 0.1 30 < th dose independent rect. 4 1
514 124.68 atmosphere 1015.0 720 < th dose independent rect. 13 17
516 124.68 precipitation 0.1 30 < th dose dependent rect. 4 1
531 124.72 wind 9.0 30 < th dose dependent rect. 4 1
534 124.73 humidity 80.0 90 > th dose dependent rect. 2 1
582 124.77 temperature 15.0 720 > th dose independent sin 11 NA
592 124.77 temperature 15.0 720 < th dose dependent sin 5 NA
602 124.78 humidity 50.0 1440 < th dose dependent sin 7 NA
615 124.80 atmosphere 1015.0 270 < th dose independent rect. 11 12
619 124.80 humidity 50.0 30 > th dose dependent rect. 4 1
631 124.82 atmosphere 1015.0 30 < th dose dependent rect. 4 1
634 124.83 atmosphere 1015.0 720 < th dose independent rect. 3 22
643 124.85 temperature 20.0 10 < th dose independent rect. 4 1
653 124.88 atmosphere 1015.0 720 < th dose independent rect. 3 20
654 124.88 precipitation 0.1 30 < th dose independent rect. 5 23
659 124.88 precipitation 0.1 30 < th dose dependent rect. 5 23
679 124.90 atmosphere 1005.0 270 > th dose dependent sin 10 NA
680 124.90 temperature 20.0 270 < th dose dependent rect. 6 1
686 124.91 temperature 15.0 720 < th dose independent sin 7 NA
747 125.04 atmosphere 1010.0 90 > th dose independent rect. 8 3
788 125.09 radiation 20.0 10 < th dose independent rect. 10 1
798 125.10 humidity 80.0 90 > th dose independent rect. 2 1
799 125.10 atmosphere 1005.0 10 > th dose independent rect. 2 2
810 125.12 atmosphere 995.0 30 > th dose independent rect. 5 23
815 125.14 wind 1.0 720 > th dose independent rect. 11 4
835 125.18 atmosphere 1015.0 90 < th dose independent rect. 18 23
837 125.18 atmosphere 1005.0 720 > th dose dependent rect. 17 1
879 125.21 temperature 25.0 10 > th dose dependent rect. 2 3
895 125.24 temperature 25.0 270 < th dose independent rect. 23 7
954 125.31 radiation 1.0 10 < th dose dependent rect. 2 16
955 125.32 humidity 90.0 10 > th dose independent rect. 2 2
969 125.34 humidity 50.0 1440 < th dose dependent no NA NA