BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0505300 Os04g0505300|Os04g0505300
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0505300  Conserved hypothetical protein                      348   2e-96
Os04g0380800  Conserved hypothetical protein                       80   7e-16

>Os04g0505300 Conserved hypothetical protein
          Length = 200

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/200 (86%), Positives = 173/200 (86%)

Query: 1   MTYLDAKVTMASVRGRVLQQTAEPDEEESMYFLKGVAPMXXXXXXXXXXEATLDDIPPIV 60
           MTYLDAKVTMASVRGRVLQQTAEPDEEESMYFLKGVAPM          EATLDDIPPIV
Sbjct: 1   MTYLDAKVTMASVRGRVLQQTAEPDEEESMYFLKGVAPMSGSEYSSSDSEATLDDIPPIV 60

Query: 61  IDAXXXXXXXXXXXXXXXXXQGPDKLGNNQPLDIVPLNSIPFRQEVAFHQKVDSSKEEVP 120
           IDA                 QGPDKLGNNQPLDIVPLNSIPFRQEVAFHQKVDSSKEEVP
Sbjct: 61  IDADLEEEENMSDMSSMLNLQGPDKLGNNQPLDIVPLNSIPFRQEVAFHQKVDSSKEEVP 120

Query: 121 VPQWMKQLDNYKDGDWTVFLQIRDDGHKDWVIPTNTNRAAMAKVGVWSLRDNDIGGWGFQ 180
           VPQWMKQLDNYKDGDWTVFLQIRDDGHKDWVIPTNTNRAAMAKVGVWSLRDNDIGGWGFQ
Sbjct: 121 VPQWMKQLDNYKDGDWTVFLQIRDDGHKDWVIPTNTNRAAMAKVGVWSLRDNDIGGWGFQ 180

Query: 181 TLSSITPLSLDNSEDAGSRS 200
           TLSSITPLSLDNSEDAGSRS
Sbjct: 181 TLSSITPLSLDNSEDAGSRS 200



>Os04g0380800 Conserved hypothetical protein
          Length = 164

 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 62/117 (52%), Gaps = 12/117 (10%)

Query: 34  KGVAPMXXXXXXXXXXEATLDDIPPIVIDAXXXXXXXXXXXXXXXXXQGPDKLGNNQPLD 93
           K +APM          +ATL D P + IDA                      LGN QPL+
Sbjct: 7   KSIAPMSDSEYDS---DATLTDNPFVGIDADSEDEENTSAMTLP--------LGN-QPLN 54

Query: 94  IVPLNSIPFRQEVAFHQKVDSSKEEVPVPQWMKQLDNYKDGDWTVFLQIRDDGHKDW 150
           +VPL++IPF Q    ++KV S KEEV VP W+K    YKDGDW V + IR +GHKDW
Sbjct: 55  VVPLSAIPFSQVQVLNRKVISGKEEVFVPHWLKVHKLYKDGDWKVSISIRANGHKDW 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,185,282
Number of extensions: 232527
Number of successful extensions: 311
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)