Os04g0505300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0505300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.26 | 0.627 | 2.96 | -0.276 | 0.193 | -0.3 | -0.804 | 1.7 | 0.114 | 2.89 | 39.8 | 254 | -- | -- |
| 178.66 | 0.627 | 2.95 | -0.216 | 0.126 | -0.882 | -0.422 | -- | 0.161 | 2.94 | 57.53 | 79 | -- | -- |
| 179.48 | 0.624 | 2.94 | -0.245 | 0.166 | -0.274 | -- | 1.61 | 0.127 | 3.48 | 49.88 | 220 | -- | -- |
| 178.41 | 0.622 | 2.95 | -0.197 | 0.147 | -0.822 | -- | -- | 0.167 | 3.62 | 57.51 | 85 | -- | -- |
| 180.76 | 0.626 | 2.94 | -0.241 | -- | -0.166 | -- | 1.53 | 0.147 | -- | 49.87 | 232 | -- | -- |
| 182.73 | 0.634 | 2.95 | -0.273 | 0.116 | -- | -0.18 | -- | 0.135 | 4.92 | -- | -- | -- | -- |
| 182.78 | 0.633 | 2.95 | -0.272 | 0.119 | -- | -- | -- | 0.136 | 5.7 | -- | -- | -- | -- |
| 179.55 | 0.624 | 2.95 | -0.191 | -- | -0.78 | -- | -- | 0.176 | -- | 58.36 | 85 | -- | -- |
| 179.39 | 0.624 | 2.94 | -- | 0.149 | -0.905 | -- | -- | 0.195 | 3.57 | 57.54 | 85 | -- | -- |
| 183.51 | 0.633 | 2.96 | -0.268 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 184.72 | 0.636 | 2.95 | -- | 0.115 | -- | -- | -- | 0.167 | 5.81 | -- | -- | -- | -- |
| 180.46 | 0.626 | 2.95 | -- | -- | -0.868 | -- | -- | 0.183 | -- | 59.05 | 85 | -- | -- |
| 185.4 | 0.636 | 2.95 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.54 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 4 |
| 9 | 172.54 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 17 | 172.59 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 1 |
| 21 | 172.59 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 25 | 172.68 | wind | 9 | 90 | > th | dose independent | rect. | 22 | 12 |
| 26 | 172.72 | wind | 9 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 27 | 172.73 | wind | 7 | 90 | > th | dose independent | rect. | 22 | 1 |
| 37 | 172.73 | wind | 7 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 109 | 174.21 | radiation | 1 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 118 | 174.23 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 119 | 174.23 | temperature | 10 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 122 | 174.23 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 126 | 174.23 | humidity | 50 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 135 | 174.23 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 136 | 174.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 156 | 174.23 | temperature | 10 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 182 | 175.41 | humidity | 60 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 194 | 175.45 | wind | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 206 | 175.54 | humidity | 60 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 220 | 175.64 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 221 | 175.65 | wind | 1 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 222 | 175.66 | wind | 1 | 1440 | < th | dose independent | sin | 18 | NA |
| 224 | 175.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 225 | 175.70 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 226 | 175.70 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 248 | 175.76 | radiation | 40 | 30 | > th | dose independent | rect. | 11 | 1 |
| 256 | 175.81 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 1 |
| 282 | 175.81 | radiation | 10 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 311 | 175.84 | wind | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 312 | 175.84 | wind | 1 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 342 | 175.95 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 14 |
| 360 | 176.02 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 363 | 176.04 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 364 | 176.06 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 365 | 176.06 | humidity | 60 | 90 | < th | dose independent | rect. | 10 | 2 |
| 367 | 176.06 | radiation | 40 | 720 | < th | dose independent | rect. | 5 | 6 |
| 380 | 176.08 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 15 |
| 381 | 176.09 | wind | 1 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 397 | 176.13 | humidity | 60 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 404 | 176.15 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 405 | 176.16 | wind | 1 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 409 | 176.17 | wind | 1 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 410 | 176.17 | wind | 1 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 411 | 176.18 | wind | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 414 | 176.18 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 442 | 176.23 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 458 | 176.25 | wind | 1 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 499 | 176.36 | wind | 1 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 500 | 176.36 | wind | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 505 | 176.39 | radiation | 40 | 720 | < th | dose independent | rect. | 7 | 4 |
| 519 | 176.43 | wind | 1 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 522 | 176.43 | wind | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 527 | 176.44 | radiation | 40 | 720 | < th | dose independent | rect. | 15 | 20 |
| 528 | 176.44 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 536 | 176.47 | wind | 1 | 1440 | > th | dose independent | rect. | 7 | 20 |
| 586 | 176.58 | radiation | 1 | 30 | < th | dose independent | rect. | 5 | 23 |
| 587 | 176.58 | radiation | 40 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 590 | 176.58 | radiation | 1 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 598 | 176.62 | humidity | 60 | 10 | < th | dose dependent | rect. | 18 | 19 |
| 656 | 176.79 | wind | 1 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 659 | 176.80 | humidity | 60 | 30 | > th | dose independent | rect. | 7 | 21 |
| 692 | 176.88 | wind | 1 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 702 | 176.89 | humidity | 60 | 90 | > th | dose independent | rect. | 5 | 23 |
| 735 | 176.94 | radiation | 30 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 741 | 176.96 | wind | 7 | 90 | > th | dose independent | rect. | 1 | 8 |
| 743 | 176.96 | wind | 1 | 270 | < th | dose dependent | rect. | 2 | 1 |
| 754 | 176.98 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 22 |
| 755 | 176.98 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 762 | 177.00 | wind | 7 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 780 | 177.05 | radiation | 40 | 270 | < th | dose independent | sin | 8 | NA |
| 822 | 177.09 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 11 |
| 829 | 177.10 | radiation | 40 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 954 | 177.19 | wind | 7 | 90 | > th | dose independent | rect. | 7 | 2 |
| 976 | 177.22 | wind | 7 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 981 | 177.22 | wind | 3 | 1440 | < th | dose dependent | rect. | 12 | 16 |