BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0502100 Os04g0502100|AK066956
         (335 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0502100  Conserved hypothetical protein                      570   e-163

>Os04g0502100 Conserved hypothetical protein
          Length = 335

 Score =  570 bits (1468), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/335 (86%), Positives = 290/335 (86%)

Query: 1   MDQGXXXXXXXXXXXXXXXXGPDQRRLSAAAPTFDPXXXXXXXXXXXXXGVPGSSPAMAP 60
           MDQG                GPDQRRLSAAAPTFDP             GVPGSSPAMAP
Sbjct: 1   MDQGSSSSMSSCSSSTTASTGPDQRRLSAAAPTFDPSMASSSSMAATTAGVPGSSPAMAP 60

Query: 61  LLXXXXXXXXXXXXXXXXFDPAGSSALAPARSPRPGLSASAPAFYPTTASSSSTPVMPAV 120
           LL                FDPAGSSALAPARSPRPGLSASAPAFYPTTASSSSTPVMPAV
Sbjct: 61  LLTSARMSSGSSASSTTSFDPAGSSALAPARSPRPGLSASAPAFYPTTASSSSTPVMPAV 120

Query: 121 PGFLPQIPEPTASCSDFPPEMLWHHPCGEQKIKGGRPDLLGREFGILAEQKRLIQRHLDL 180
           PGFLPQIPEPTASCSDFPPEMLWHHPCGEQKIKGGRPDLLGREFGILAEQKRLIQRHLDL
Sbjct: 121 PGFLPQIPEPTASCSDFPPEMLWHHPCGEQKIKGGRPDLLGREFGILAEQKRLIQRHLDL 180

Query: 181 KEEMHLRHNKEIENAFISETRLARGVEQDLLGDCKKAVLVQQDQSGKEEESHQCLRQLQD 240
           KEEMHLRHNKEIENAFISETRLARGVEQDLLGDCKKAVLVQQDQSGKEEESHQCLRQLQD
Sbjct: 181 KEEMHLRHNKEIENAFISETRLARGVEQDLLGDCKKAVLVQQDQSGKEEESHQCLRQLQD 240

Query: 241 VNGEQLVGVPKLGLPGAEENVACNNTASHKEFSEFPGPDIKFGSINIRDIPLLQGRQAAV 300
           VNGEQLVGVPKLGLPGAEENVACNNTASHKEFSEFPGPDIKFGSINIRDIPLLQGRQAAV
Sbjct: 241 VNGEQLVGVPKLGLPGAEENVACNNTASHKEFSEFPGPDIKFGSINIRDIPLLQGRQAAV 300

Query: 301 ILPNPQLDRRTSGLTPAGASSLDQETDQELNEKLL 335
           ILPNPQLDRRTSGLTPAGASSLDQETDQELNEKLL
Sbjct: 301 ILPNPQLDRRTSGLTPAGASSLDQETDQELNEKLL 335



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,585,722
Number of extensions: 556565
Number of successful extensions: 2469
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2466
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 234
Effective length of database: 11,762,187
Effective search space: 2752351758
Effective search space used: 2752351758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)