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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0502100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0199) R2 : 0.0117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0973 (0.0418) R2dN8 : 0.0152 R2N8 : 0.0117
σ : 0.374
deviance : 64.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.42 0.365 3.14 -0.092 0.0781 1.2 0.0667 3.27 0.091 20.5 9.343 7 -- --
62.27 0.368 3.13 -0.0742 0.0753 0.452 0.034 -- 0.0944 19.8 9.5 5 -- --
60.42 0.362 3.14 -0.0942 0.0777 1.2 -- 3.25 0.0908 21 9.327 6 -- --
62.24 0.367 3.13 -0.0735 0.0779 0.473 -- -- 0.098 20.8 9.484 5 -- --
60.77 0.363 3.14 -0.0944 -- 1.18 -- 3.2 0.0901 -- 9.322 6 -- --
63.62 0.374 3.13 -0.0971 0.0356 -- 0.301 -- 0.086 16.5 -- -- -- --
63.69 0.374 3.13 -0.0958 0.0672 -- -- -- 0.0875 20 -- -- -- --
62.57 0.368 3.13 -0.0746 -- 0.449 -- -- 0.0979 -- 9.47 5 -- --
62.38 0.368 3.13 -- 0.0763 0.48 -- -- 0.107 21 9.453 5 -- --
63.93 0.374 3.13 -0.0965 -- -- -- -- 0.0866 -- -- -- -- --
63.93 0.374 3.13 -- 0.0678 -- -- -- 0.0981 19.9 -- -- -- --
62.71 0.369 3.13 -- -- 0.462 -- -- 0.106 -- 9.438 5 -- --
64.18 0.374 3.13 -- -- -- -- -- 0.0973 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.95 humidity 70.0 30 < th dose independent rect. 19 1
13 59.12 humidity 70.0 30 < th dose dependent rect. 19 1
72 59.87 temperature 30.0 90 > th dose dependent rect. 18 1
97 59.94 wind 7.0 90 < th dose independent rect. 21 22
99 59.96 temperature 30.0 90 > th dose independent rect. 18 1
113 60.02 humidity 90.0 90 < th dose independent rect. 19 2
116 60.12 wind 9.0 90 > th dose dependent rect. 10 1
117 60.17 wind 5.0 90 > th dose dependent rect. 10 1
130 60.25 wind 7.0 90 > th dose independent rect. 10 1
131 60.25 precipitation 0.1 1440 < th dose independent rect. 15 1
132 60.25 precipitation 0.1 1440 < th dose dependent rect. 15 1
134 60.30 precipitation 0.1 1440 > th dose independent rect. 15 1
135 60.30 precipitation 0.1 1440 > th dose dependent rect. 15 1
139 60.31 wind 5.0 720 > th dose independent rect. 4 1
140 60.31 wind 5.0 720 > th dose dependent rect. 4 1
157 60.37 wind 9.0 10 < th dose independent rect. 21 23
175 60.47 humidity 90.0 1440 > th dose dependent rect. 15 2
176 60.48 wind 5.0 10 > th dose dependent rect. 11 1
186 60.54 wind 7.0 10 > th dose independent rect. 11 1
189 60.56 wind 5.0 90 < th dose independent rect. 19 2
229 60.64 atmosphere 1010.0 90 < th dose independent rect. 4 14
231 60.65 precipitation 0.1 90 < th dose independent rect. 19 2
233 60.65 precipitation 0.1 90 < th dose dependent rect. 19 2
239 60.66 humidity 90.0 30 < th dose independent rect. 19 4
296 60.75 temperature 10.0 270 > th dose dependent rect. 17 10
321 60.81 atmosphere 1010.0 30 < th dose independent rect. 8 11
338 60.85 humidity 90.0 90 < th dose dependent rect. 19 2
346 60.86 atmosphere 1000.0 90 > th dose independent rect. 19 2
357 60.87 atmosphere 1015.0 30 < th dose independent rect. 19 17
373 60.88 atmosphere 1010.0 90 < th dose independent rect. 11 8
386 60.89 humidity 50.0 270 > th dose dependent rect. 20 11
389 60.90 humidity 70.0 4320 > th dose independent rect. 20 2
397 60.90 radiation 40.0 270 < th dose dependent rect. 20 11
414 60.92 temperature 10.0 270 > th dose independent rect. 20 11
415 60.92 temperature 30.0 270 < th dose independent rect. 20 11
416 60.92 humidity 50.0 270 > th dose independent rect. 20 11
419 60.92 atmosphere 995.0 270 > th dose independent rect. 20 11
420 60.92 radiation 30.0 270 < th dose independent rect. 20 11
422 60.92 temperature 10.0 270 > th dose independent rect. 7 13
423 60.92 atmosphere 1015.0 270 < th dose independent rect. 7 13
428 60.92 humidity 50.0 90 > th dose dependent rect. 23 11
457 60.95 wind 1.0 90 > th dose independent rect. 19 2
458 60.95 wind 5.0 720 < th dose independent rect. 1 7
459 60.95 atmosphere 995.0 30 > th dose independent rect. 12 7
460 60.95 wind 9.0 270 < th dose independent rect. 20 11
494 60.99 humidity 90.0 90 < th dose independent rect. 18 11
496 60.99 temperature 15.0 90 > th dose independent rect. 21 22
507 61.00 wind 1.0 270 > th dose independent rect. 7 14
509 61.00 precipitation 0.1 30 < th dose independent rect. 19 17
510 61.00 humidity 90.0 90 < th dose independent rect. 18 18
519 61.00 precipitation 0.1 30 < th dose dependent rect. 19 17
555 61.04 temperature 20.0 10 < th dose independent rect. 13 8
557 61.04 atmosphere 995.0 90 > th dose independent rect. 21 22
569 61.05 wind 9.0 270 < th dose independent rect. 7 13
574 61.05 temperature 15.0 30 > th dose independent rect. 19 17
582 61.06 atmosphere 1010.0 270 < th dose independent rect. 9 8
596 61.07 temperature 20.0 10 < th dose independent rect. 15 5
601 61.07 precipitation 0.1 270 < th dose independent rect. 7 13
605 61.07 precipitation 0.1 270 < th dose dependent rect. 7 13
606 61.08 wind 9.0 90 > th dose independent sin 7 NA
612 61.08 atmosphere 1010.0 90 < th dose independent rect. 21 22
619 61.09 temperature 10.0 90 > th dose independent rect. 19 2
621 61.09 temperature 30.0 90 < th dose independent rect. 19 2
622 61.09 humidity 50.0 90 > th dose independent rect. 19 2
625 61.09 atmosphere 1010.0 90 < th dose independent rect. 19 2
627 61.09 radiation 1.0 90 < th dose independent rect. 19 2
637 61.09 precipitation 0.1 270 < th dose independent rect. 20 11
642 61.09 radiation 1.0 90 < th dose dependent rect. 19 2
647 61.09 precipitation 0.1 270 > th dose dependent rect. 17 2
652 61.09 precipitation 0.1 270 < th dose dependent rect. 20 11
668 61.10 atmosphere 995.0 30 > th dose dependent rect. 12 7
673 61.10 humidity 60.0 90 > th dose dependent rect. 21 13
676 61.11 wind 9.0 90 < th dose independent sin 7 NA
680 61.11 atmosphere 1010.0 90 > th dose independent rect. 10 1
694 61.11 wind 7.0 270 < th dose independent rect. 16 11
696 61.11 atmosphere 1000.0 270 < th dose dependent rect. 16 1
700 61.11 wind 1.0 90 > th dose dependent rect. 7 5
704 61.12 atmosphere 1000.0 270 < th dose independent rect. 16 1
718 61.12 wind 9.0 90 > th dose independent rect. 15 20
741 61.13 atmosphere 1015.0 10 < th dose dependent rect. 20 1
750 61.14 precipitation 0.1 270 > th dose independent rect. 18 1
776 61.15 wind 1.0 30 > th dose independent rect. 12 7
777 61.15 wind 9.0 30 < th dose independent rect. 12 7
780 61.15 wind 9.0 30 < th dose independent rect. 19 17
782 61.15 radiation 1.0 90 > th dose independent rect. 12 18
784 61.15 wind 7.0 90 > th dose dependent sin 6 NA
790 61.16 precipitation 0.1 270 > th dose independent rect. 16 1
792 61.16 temperature 10.0 30 > th dose independent rect. 12 7
799 61.16 atmosphere 995.0 30 > th dose independent rect. 19 17
801 61.16 atmosphere 1005.0 10 > th dose dependent rect. 11 1
804 61.16 wind 9.0 30 < th dose dependent rect. 19 2
824 61.17 wind 9.0 10 > th dose independent rect. 11 5
861 61.18 precipitation 0.1 30 < th dose independent rect. 12 7
876 61.18 precipitation 0.1 30 < th dose dependent rect. 12 7
880 61.19 atmosphere 1010.0 720 > th dose independent rect. 1 1
980 61.22 atmosphere 1010.0 90 < th dose independent rect. 23 19
984 61.22 humidity 90.0 90 < th dose dependent rect. 19 4