BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0499200 Os04g0499200|AK069440
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0499200  Enhancer of rudimentary family protein              229   4e-61
Os02g0611450  Enhancer of rudimentary family protein              127   3e-30

>Os04g0499200 Enhancer of rudimentary family protein
          Length = 110

 Score =  229 bits (584), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   SCPGQALRALPCFLIHFLCLYVCSSLEELGTYSLLYGMTGICGLYERKIRDINPMARDLT 60
           SCPGQALRALPCFLIHFLCLYVCSSLEELGTYSLLYGMTGICGLYERKIRDINPMARDLT
Sbjct: 1   SCPGQALRALPCFLIHFLCLYVCSSLEELGTYSLLYGMTGICGLYERKIRDINPMARDLT 60

Query: 61  YDINDLYNFIDGLTDISALVFDRSLHAFLPYDRRWIKQEMFQHLKRLAQQ 110
           YDINDLYNFIDGLTDISALVFDRSLHAFLPYDRRWIKQEMFQHLKRLAQQ
Sbjct: 61  YDINDLYNFIDGLTDISALVFDRSLHAFLPYDRRWIKQEMFQHLKRLAQQ 110



>Os02g0611450 Enhancer of rudimentary family protein
          Length = 103

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 69/78 (88%)

Query: 33  SLLYGMTGICGLYERKIRDINPMARDLTYDINDLYNFIDGLTDISALVFDRSLHAFLPYD 92
           S+ + + G+CGLYERKIRDINPM  ++TYDI DLYNFIDGL DISALV+D S+ AFLPYD
Sbjct: 26  SINHALDGLCGLYERKIRDINPMVPNITYDITDLYNFIDGLADISALVYDHSIQAFLPYD 85

Query: 93  RRWIKQEMFQHLKRLAQQ 110
           R+WIKQ++FQHLK+LAQ+
Sbjct: 86  RQWIKQKLFQHLKKLAQR 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.146    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,481,228
Number of extensions: 117136
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 2
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)