Os04g0499200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Enhancer of rudimentary family protein.
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Os04g0499200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Enhancer of rudimentary family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.05 | 0.426 | 11 | -2.03 | 0.847 | -0.887 | -0.0381 | 1.36 | -0.561 | 10.1 | 88.85 | 254 | -- | -- |
| 85.65 | 0.431 | 11 | -1.98 | 0.848 | -0.812 | -0.0861 | -- | -0.545 | 10 | 87.75 | 262 | -- | -- |
| 82.06 | 0.422 | 11 | -2.03 | 0.847 | -0.888 | -- | 1.36 | -0.562 | 10.1 | 88.86 | 253 | -- | -- |
| 85.66 | 0.431 | 11 | -1.98 | 0.849 | -0.821 | -- | -- | -0.544 | 9.97 | 87.8 | 262 | -- | -- |
| 106.99 | 0.484 | 11 | -2.09 | -- | -0.781 | -- | 0.718 | -0.512 | -- | 74.4 | 2 | -- | -- |
| 99.75 | 0.468 | 11 | -2.07 | 0.847 | -- | -0.217 | -- | -0.414 | 12 | -- | -- | -- | -- |
| 99.95 | 0.468 | 11 | -2.08 | 0.848 | -- | -- | -- | -0.415 | 11.9 | -- | -- | -- | -- |
| 108.95 | 0.486 | 11 | -2.06 | -- | -0.759 | -- | -- | -0.505 | -- | 74.68 | 9 | -- | -- |
| 186.48 | 0.636 | 10.9 | -- | 0.926 | -1.12 | -- | -- | -0.373 | 9.45 | 87.16 | 278 | -- | -- |
| 145.19 | 0.563 | 11 | -2.11 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 214.1 | 0.684 | 10.9 | -- | 0.875 | -- | -- | -- | -0.183 | 12.1 | -- | -- | -- | -- |
| 217.41 | 0.687 | 11 | -- | -- | -0.882 | -- | -- | -0.339 | -- | 81.3 | 8 | -- | -- |
| 262.28 | 0.756 | 10.9 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 4 | 76.90 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 17 | 79.10 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 3 |
| 19 | 79.54 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 34 | 80.35 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 36 | 80.43 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 61 | 81.04 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 63 | 81.22 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 65 | 81.27 | humidity | 90.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 67 | 81.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 82 | 81.54 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 86 | 81.62 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 90 | 81.67 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 92 | 81.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 95 | 81.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 107 | 81.88 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 126 | 82.29 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 131 | 82.34 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 134 | 82.34 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 136 | 82.36 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 142 | 82.37 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 169 | 82.50 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 182 | 82.61 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 192 | 82.70 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 220 | 82.97 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 267 | 83.44 | humidity | 90.0 | 720 | > th | dose independent | rect. | 9 | 15 |
| 272 | 83.50 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 279 | 83.57 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 366 | 84.10 | humidity | 90.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 367 | 84.10 | humidity | 90.0 | 270 | > th | dose independent | rect. | 20 | 22 |
| 376 | 84.17 | humidity | 90.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 385 | 84.21 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 22 |
| 402 | 84.29 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 404 | 84.29 | humidity | 90.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 426 | 84.37 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 427 | 84.37 | humidity | 80.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 429 | 84.38 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 433 | 84.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 434 | 84.40 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 457 | 84.44 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 461 | 84.45 | humidity | 90.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 462 | 84.45 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 463 | 84.46 | humidity | 90.0 | 720 | > th | dose independent | sin | 16 | NA |
| 480 | 84.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 490 | 84.50 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 557 | 84.61 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 601 | 84.71 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 23 |
| 613 | 84.73 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 17 |
| 631 | 84.76 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 669 | 84.82 | humidity | 90.0 | 270 | > th | dose independent | rect. | 2 | 23 |
| 672 | 84.84 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 680 | 84.85 | humidity | 90.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 763 | 84.98 | humidity | 90.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 840 | 85.11 | humidity | 90.0 | 720 | < th | dose independent | sin | 15 | NA |
| 908 | 85.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 936 | 85.25 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 20 |
| 955 | 85.27 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 982 | 85.29 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |