BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0496600 Os04g0496600|AK065058
         (239 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0496600  Conserved hypothetical protein                      150   9e-37

>Os04g0496600 Conserved hypothetical protein
          Length = 239

 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 85/142 (59%)

Query: 1   FPSSSSAPQXXXXXXXXXXXXXXXXXXXXAKNXXXXXXXXXXXXXXXXXXXXVQGDAAGA 60
           FPSSSSAPQ                    AKN                    VQGDAAGA
Sbjct: 1   FPSSSSAPQSGLALRRARGERERESSLARAKNRRGGGGGRGEGERRHGEEPGVQGDAAGA 60

Query: 61  AXXXXXXXXXXXXXXXXXEWHAARLASLNKTHTVTWEEFKKKQKEDELKRGEMEADKDKM 120
           A                 EWHAARLASLNKTHTVTWEEFKKKQKEDELKRGEMEADKDKM
Sbjct: 61  AGLLVRRPGRHRLPRRRHEWHAARLASLNKTHTVTWEEFKKKQKEDELKRGEMEADKDKM 120

Query: 121 MREYRAQLDAERAQKLALGRNH 142
           MREYRAQLDAERAQKLALGRNH
Sbjct: 121 MREYRAQLDAERAQKLALGRNH 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.309    0.124    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,536,176
Number of extensions: 84326
Number of successful extensions: 370
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)