BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0467100 Os04g0467100|AK072142
         (663 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0467100  Conserved hypothetical protein                     1273   0.0  

>Os04g0467100 Conserved hypothetical protein
          Length = 663

 Score = 1273 bits (3293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/663 (94%), Positives = 627/663 (94%)

Query: 1   MQIMKIDDGRPYHSNVFHELVSNGGPKVDGEIERETKQHILLDTMVQQTNPSEYSFMKAG 60
           MQIMKIDDGRPYHSNVFHELVSNGGPKVDGEIERETKQHILLDTMVQQTNPSEYSFMKAG
Sbjct: 1   MQIMKIDDGRPYHSNVFHELVSNGGPKVDGEIERETKQHILLDTMVQQTNPSEYSFMKAG 60

Query: 61  QQNVDKAIQIRPEDVSYDKDVVEIKLPDIMVSSNYGVQFVKDVCIDEGVLADQKAIAEKV 120
           QQNVDKAIQIRPEDVSYDKDVVEIKLPDIMVSSNYGVQFVKDVCIDEGVLADQKAIAEKV
Sbjct: 61  QQNVDKAIQIRPEDVSYDKDVVEIKLPDIMVSSNYGVQFVKDVCIDEGVLADQKAIAEKV 120

Query: 121 SLNLNSSKGDTNGIRIKETADEPAKSVNDLKSQIVVLPEACVTDGDTVEQNHPCKLHDLE 180
           SLNLNSSKGDTNGIRIKETADEPAKSVNDLKSQIVVLPEACVTDGDTVEQNHPCKLHDLE
Sbjct: 121 SLNLNSSKGDTNGIRIKETADEPAKSVNDLKSQIVVLPEACVTDGDTVEQNHPCKLHDLE 180

Query: 181 GNSSVDGLTVVNVEKSTPKQLVSNDNAEYCQQMGADVSESSENHGPNLNGEPVDQVPSND 240
           GNSSVDGLTVVNVEKSTPKQLVSNDNAEYCQQMGADVSESSENHGPNLNGEPVDQVPSND
Sbjct: 181 GNSSVDGLTVVNVEKSTPKQLVSNDNAEYCQQMGADVSESSENHGPNLNGEPVDQVPSND 240

Query: 241 SHETGASIASAITNVNGLSVESTADGHSGVVTEDGVSGVALNKTEINQINHYNPFIAYGS 300
           SHETGASIASAITNVNGLSVESTADGHSGVVTEDGVSGVALNKTEINQINHYNPFIAYGS
Sbjct: 241 SHETGASIASAITNVNGLSVESTADGHSGVVTEDGVSGVALNKTEINQINHYNPFIAYGS 300

Query: 301 LEDTWEPKYSLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSV 360
           LEDTWEPKYSLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSV
Sbjct: 301 LEDTWEPKYSLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAEDSTLDSV 360

Query: 361 VENSSMTDVQASEEKDEARSDDILSDERKIPVDQRSPVENSDSLSDPVDRALSSTETDGA 420
           VENSSMTDVQASEEKDEARSDDILSDERKIPVDQRSPVENSDSLSDPVDRALSSTETDGA
Sbjct: 361 VENSSMTDVQASEEKDEARSDDILSDERKIPVDQRSPVENSDSLSDPVDRALSSTETDGA 420

Query: 421 RNEDSRLDSTEASPSRSYVQPSEDRNDQVDNFVYGIRTDAAHGTSSGTSPLTGKTEPIDA 480
           RNEDSRLDSTEASPSRSYVQPSEDRNDQVDNFVYGIRTDAAHGTSSGTSPLTGKTEPIDA
Sbjct: 421 RNEDSRLDSTEASPSRSYVQPSEDRNDQVDNFVYGIRTDAAHGTSSGTSPLTGKTEPIDA 480

Query: 481 KSENDPKCEIDSVQDGHDFNPREANDGTNISEDNKDSKSSTRQTGPVTEQNEPDSAKMTM 540
           KSENDPKCEIDSVQDGHDFNPREANDGTNISEDNKDSKSSTRQTGPVTEQNEPDSAKMTM
Sbjct: 481 KSENDPKCEIDSVQDGHDFNPREANDGTNISEDNKDSKSSTRQTGPVTEQNEPDSAKMTM 540

Query: 541 QTEPVAQRNEPDSAKVTMQTESVAQPNEADSAKVTARNVIRNXXXXXXXXXXXXXXPLTP 600
           QTEPVAQRNEPDSAKVTMQTESVAQPNEADSAKVTARNVIRN              PLTP
Sbjct: 541 QTEPVAQRNEPDSAKVTMQTESVAQPNEADSAKVTARNVIRNPFESSFSGPSIISGPLTP 600

Query: 601 SGHIPYSGNIXXXXXXXXXXXXXFAFPVLQTEWNSSPVKMAKAXXXXXXXXXGWGYRILC 660
           SGHIPYSGNI             FAFPVLQTEWNSSPVKMAKA         GWGYRILC
Sbjct: 601 SGHIPYSGNISLRSDSSTTSTRSFAFPVLQTEWNSSPVKMAKADRRRLRRDRGWGYRILC 660

Query: 661 CKF 663
           CKF
Sbjct: 661 CKF 663



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,073,560
Number of extensions: 882629
Number of successful extensions: 2577
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2569
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 556
Effective length of database: 11,448,903
Effective search space: 6365590068
Effective search space used: 6365590068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 159 (65.9 bits)