BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0463200 Os04g0463200|J075120H08
         (303 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0463200  Protein of unknown function DUF593 family protein   293   2e-79

>Os04g0463200 Protein of unknown function DUF593 family protein
          Length = 303

 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 15  FLKPLAGVSFAFMPGVGAFYFLVGSVLGFLAMVYSSESDEAGGDWASAERWVALARSVSA 74
           FLKPLAGVSFAFMPGVGAFYFLVGSVLGFLAMVYSSESDEAGGDWASAERWVALARSVSA
Sbjct: 15  FLKPLAGVSFAFMPGVGAFYFLVGSVLGFLAMVYSSESDEAGGDWASAERWVALARSVSA 74

Query: 75  PQMFVGIPLLLLATGVWRLGKRCEAVEGLVGNADATVQALRVGGVVCAVCGTKILALKKK 134
           PQMFVGIPLLLLATGVWRLGKRCEAVEGLVGNADATVQALRVGGVVCAVCGTKILALKKK
Sbjct: 75  PQMFVGIPLLLLATGVWRLGKRCEAVEGLVGNADATVQALRVGGVVCAVCGTKILALKKK 134

Query: 135 GGLPPSPTPSPARSKGSCSDKPVAR 159
           GGLPPSPTPSPARSKGSCSDKPVAR
Sbjct: 135 GGLPPSPTPSPARSKGSCSDKPVAR 159




 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 55/70 (78%)

Query: 234 KIACLRNEKALVEREARQFREMAQQKQMYDRQQIESLQWVIQRFGMPCGXXXXXXXXXXX 293
           KIACLRNEKALVEREARQFREMAQQKQMYDRQQIESLQWVIQRFGMPCG           
Sbjct: 234 KIACLRNEKALVEREARQFREMAQQKQMYDRQQIESLQWVIQRFGMPCGEAEVSSERAVS 293

Query: 294 XXXXDDRDRK 303
               DDRDRK
Sbjct: 294 ETSEDDRDRK 303



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,162,938
Number of extensions: 271173
Number of successful extensions: 1805
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 203
Effective length of database: 11,814,401
Effective search space: 2398323403
Effective search space used: 2398323403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)