Os04g0463200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF593 family protein.
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Os04g0463200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF593 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.91 | 0.504 | 11.8 | 0.572 | 2.99 | -0.63 | 0.623 | 2.17 | 0.311 | 17 | 42.32 | 1396 | -- | -- |
| 121.33 | 0.513 | 11.8 | 0.381 | 2.96 | -0.641 | 0.405 | -- | 0.259 | 17 | 45.59 | 1404 | -- | -- |
| 115.23 | 0.5 | 11.8 | 0.597 | 2.98 | -0.723 | -- | 2.38 | 0.277 | 17 | 45.9 | 1408 | -- | -- |
| 121.94 | 0.514 | 11.8 | 0.342 | 2.96 | -0.613 | -- | -- | 0.229 | 17 | 46.5 | 1404 | -- | -- |
| 581.58 | 1.12 | 11.7 | 0.467 | -- | -0.984 | -- | 2.38 | 0.279 | -- | 46.51 | 1361 | -- | -- |
| 130.51 | 0.536 | 11.8 | 0.323 | 3 | -- | 0.618 | -- | 0.176 | 17 | -- | -- | -- | -- |
| 131.48 | 0.537 | 11.8 | 0.324 | 3.01 | -- | -- | -- | 0.179 | 17 | -- | -- | -- | -- |
| 585.02 | 1.13 | 11.8 | 0.236 | -- | -0.932 | -- | -- | 0.189 | -- | 45.6 | 1365 | -- | -- |
| 124.7 | 0.52 | 11.8 | -- | 2.97 | -0.602 | -- | -- | 0.2 | 17 | 46.09 | 1401 | -- | -- |
| 607.14 | 1.15 | 11.8 | 0.214 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 134.25 | 0.542 | 11.8 | -- | 3 | -- | -- | -- | 0.143 | 17 | -- | -- | -- | -- |
| 586.27 | 1.13 | 11.8 | -- | -- | -0.932 | -- | -- | 0.148 | -- | 46.61 | 1366 | -- | -- |
| 608.36 | 1.15 | 11.8 | -- | -- | -- | -- | -- | 0.0781 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 2 | 106.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 12 |
| 5 | 107.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 8 | 108.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 21 |
| 9 | 108.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 19 |
| 26 | 109.97 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 10 |
| 27 | 110.07 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 33 | 110.34 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 12 |
| 39 | 110.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 53 | 111.40 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 6 |
| 71 | 111.99 | radiation | 40.0 | 720 | < th | dose independent | rect. | 19 | 14 |
| 79 | 112.06 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 4 |
| 89 | 112.24 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 5 |
| 95 | 112.29 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 105 | 112.56 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 106 | 112.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 18 |
| 109 | 112.67 | radiation | 30.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 115 | 112.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 116 | 112.76 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 122 | 112.91 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 146 | 112.98 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 151 | 113.08 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 160 | 113.19 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 3 |
| 166 | 113.22 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 21 |
| 168 | 113.22 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 7 | 7 |
| 170 | 113.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 20 |
| 192 | 113.42 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 21 | 11 |
| 193 | 113.43 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 211 | 113.53 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 219 | 113.61 | radiation | 30.0 | 720 | < th | dose independent | rect. | 5 | 3 |
| 235 | 113.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 239 | 113.75 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 5 |
| 243 | 113.77 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 259 | 113.91 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 279 | 114.00 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 13 |
| 287 | 114.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 290 | 114.05 | humidity | 70.0 | 720 | > th | dose independent | rect. | 21 | 11 |
| 291 | 114.05 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 4 |
| 298 | 114.11 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 334 | 114.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 340 | 114.26 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 341 | 114.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 362 | 114.35 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 371 | 114.39 | temperature | 20.0 | 10 | < th | dose independent | rect. | 24 | 6 |
| 385 | 114.46 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 7 | 10 |
| 401 | 114.54 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 404 | 114.56 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 428 | 114.66 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 442 | 114.71 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 473 | 114.75 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 497 | 114.83 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 507 | 114.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 516 | 114.90 | humidity | 70.0 | 720 | > th | dose independent | rect. | 5 | 3 |
| 536 | 114.98 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 21 | 12 |
| 537 | 114.99 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 593 | 115.20 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 594 | 115.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 597 | 115.22 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 660 | 115.30 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 672 | 115.33 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 7 | 20 |
| 730 | 115.43 | temperature | 20.0 | 720 | > th | dose independent | sin | 11 | NA |
| 762 | 115.54 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 3 |
| 763 | 115.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 768 | 115.55 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 18 | 12 |
| 773 | 115.57 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 774 | 115.57 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 779 | 115.59 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 783 | 115.60 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 789 | 115.61 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 791 | 115.62 | temperature | 10.0 | 720 | > th | dose independent | rect. | 9 | 11 |
| 792 | 115.62 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 9 | 11 |
| 793 | 115.62 | temperature | 10.0 | 720 | > th | dose independent | rect. | 20 | 13 |
| 796 | 115.62 | humidity | 50.0 | 720 | > th | dose independent | rect. | 20 | 13 |
| 797 | 115.62 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 20 | 13 |
| 812 | 115.65 | temperature | 10.0 | 720 | > th | dose independent | rect. | 21 | 11 |
| 813 | 115.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 21 | 11 |
| 814 | 115.65 | humidity | 50.0 | 720 | > th | dose independent | rect. | 21 | 11 |
| 816 | 115.65 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 21 | 11 |
| 817 | 115.65 | temperature | 10.0 | 720 | > th | dose independent | rect. | 8 | 13 |
| 835 | 115.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 11 |
| 838 | 115.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 847 | 115.74 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 21 |
| 889 | 115.81 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 902 | 115.87 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 914 | 115.90 | temperature | 20.0 | 270 | < th | dose independent | sin | 10 | NA |
| 922 | 115.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 941 | 115.96 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 944 | 115.97 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 7 | 10 |
| 947 | 115.99 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 13 |
| 951 | 116.00 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 959 | 116.02 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 13 |
| 960 | 116.02 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 976 | 116.06 | temperature | 20.0 | 720 | < th | dose independent | sin | 12 | NA |
| 995 | 116.09 | wind | 9.0 | 720 | < th | dose independent | rect. | 21 | 11 |