BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0457700 Os04g0457700|J075145N15
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0457700  Conserved hypothetical protein                      271   2e-73
Os04g0637300                                                       75   1e-14

>Os04g0457700 Conserved hypothetical protein
          Length = 150

 Score =  271 bits (692), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 132/150 (88%)

Query: 1   MWHVPSRPESPAFNLCPHFVHYVRTTFLCIRNAAGVQGSAGGLHXXXXXXXXXXXXXXXX 60
           MWHVPSRPESPAFNLCPHFVHYVRTTFLCIRNAAGVQGSAGGLH                
Sbjct: 1   MWHVPSRPESPAFNLCPHFVHYVRTTFLCIRNAAGVQGSAGGLHNGGTAPSAAAANGSTT 60

Query: 61  XXYDDRGTGGQTATFQVQQGAQPEEETTTEMGNAAEAATGSRLPDCTHACGPCSPCRRVM 120
             YDDRGTGGQTATFQVQQGAQPEEETTTEMGNAAEAATGSRLPDCTHACGPCSPCRRVM
Sbjct: 61  TAYDDRGTGGQTATFQVQQGAQPEEETTTEMGNAAEAATGSRLPDCTHACGPCSPCRRVM 120

Query: 121 VSLRCAEAAESCPVAYRCMCRGRFFRVPTL 150
           VSLRCAEAAESCPVAYRCMCRGRFFRVPTL
Sbjct: 121 VSLRCAEAAESCPVAYRCMCRGRFFRVPTL 150



>Os04g0637300 
          Length = 133

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 98  ATGSRLPDCTHACGPCSPCRRVMVSLRCAEAAESCPVAYRCMCRGRFFRVPT 149
           ATGS LPDC+HACG CSPC RVMVS +C+  AE CP+ YRCMC+G+ + VP+
Sbjct: 82  ATGSSLPDCSHACGACSPCNRVMVSFKCS-IAEPCPMVYRCMCKGKCYPVPS 132



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,088,692
Number of extensions: 178198
Number of successful extensions: 636
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)