BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0452500 Os04g0452500|Os04g0452500
         (829 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0452500  Prefoldin domain containing protein                1500   0.0  

>Os04g0452500 Prefoldin domain containing protein
          Length = 829

 Score = 1500 bits (3884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/829 (90%), Positives = 750/829 (90%)

Query: 1   MQKLGLSGLRGLEGFRSLAGSTSTAAKAPNPKPSSDIGGSTYGSFANLKITAEKLVKEQA 60
           MQKLGLSGLRGLEGFRSLAGSTSTAAKAPNPKPSSDIGGSTYGSFANLKITAEKLVKEQA
Sbjct: 1   MQKLGLSGLRGLEGFRSLAGSTSTAAKAPNPKPSSDIGGSTYGSFANLKITAEKLVKEQA 60

Query: 61  SVKTDLEMTHTKLRRATEQINLLEAKLQQAVNENAKLKVKQTEDSKLWQGLDSKVSSTKT 120
           SVKTDLEMTHTKLRRATEQINLLEAKLQQAVNENAKLKVKQTEDSKLWQGLDSKVSSTKT
Sbjct: 61  SVKTDLEMTHTKLRRATEQINLLEAKLQQAVNENAKLKVKQTEDSKLWQGLDSKVSSTKT 120

Query: 121 LCNQLTETLQQLASQTERGKQEMLRIKQEKEEMDQSYKEQLYASDTTIREKNSLIKQLED 180
           LCNQLTETLQQLASQTERGKQEMLRIKQEKEEMDQSYKEQLYASDTTIREKNSLIKQLED
Sbjct: 121 LCNQLTETLQQLASQTERGKQEMLRIKQEKEEMDQSYKEQLYASDTTIREKNSLIKQLED 180

Query: 181 SIEQNKARLLYVDSRLECMEQELKLKEDVCICLKENLASTESEKNDLKLRNEGYTLEVQK 240
           SIEQNKARLLYVDSRLECMEQELKLKEDVCICLKENLASTESEKNDLKLRNEGYTLEVQK
Sbjct: 181 SIEQNKARLLYVDSRLECMEQELKLKEDVCICLKENLASTESEKNDLKLRNEGYTLEVQK 240

Query: 241 LSKDNKELNELLSGFTVKVTELDKEHTSISSHVTQLISSFERYDGKVHEEKMLMIKSAKD 300
           LSKDNKELNELLSGFTVKVTELDKEHTSISSHVTQLISSFERYDGKVHEEKMLMIKSAKD
Sbjct: 241 LSKDNKELNELLSGFTVKVTELDKEHTSISSHVTQLISSFERYDGKVHEEKMLMIKSAKD 300

Query: 301 KFEHLQNQYVNLISENNALQTEIEELKSRIIELQKTQEIVMVQHVEECQVAEDKIRRLXX 360
           KFEHLQNQYVNLISENNALQTEIEELKSRIIELQKTQEIVMVQHVEECQVAEDKIRRL  
Sbjct: 301 KFEHLQNQYVNLISENNALQTEIEELKSRIIELQKTQEIVMVQHVEECQVAEDKIRRLES 360

Query: 361 XXXXXXXXXXQLEKVASDLEGRVQKLLEDSRSAENHXXXXXXXXXXXXSDNQELLGRVQS 420
                     QLEKVASDLEGRVQKLLEDSRSAENH            SDNQELLGRVQS
Sbjct: 361 EAEISASNISQLEKVASDLEGRVQKLLEDSRSAENHKQELLQKILKLESDNQELLGRVQS 420

Query: 421 VLNEKSNDTESLQGEIAKRDQQVETLENQVNQLCSIIDEKEQLHTCAVEREKNLEEQKLQ 480
           VLNEKSNDTESLQGEIAKRDQQVETLENQVNQLCSIIDEKEQLHTCAVEREKNLEEQKLQ
Sbjct: 421 VLNEKSNDTESLQGEIAKRDQQVETLENQVNQLCSIIDEKEQLHTCAVEREKNLEEQKLQ 480

Query: 481 VQASLAATESQLTEAKKQYDIMLEGXXXXXXXXXXXXXXXNDQAINEIRRKYXXXXXXXX 540
           VQASLAATESQLTEAKKQYDIMLEG               NDQAINEIRRKY        
Sbjct: 481 VQASLAATESQLTEAKKQYDIMLEGKKIELSKHLKELSLKNDQAINEIRRKYELEKVEII 540

Query: 541 XXXXXXXXXXXXXXXNKCNEKISENRQDSERYLMCLKEEHGSMVARIQQDNEHKESTLRA 600
                          NKCNEKISENRQDSERYLMCLKEEHGSMVARIQQDNEHKESTLRA
Sbjct: 541 NIEKEKAEKLIKEMENKCNEKISENRQDSERYLMCLKEEHGSMVARIQQDNEHKESTLRA 600

Query: 601 YHKEELQRIQSQAENELRERLSSLRKDHEIQMKSLTKKHEENCXXXXXXXXXXXXXXXXX 660
           YHKEELQRIQSQAENELRERLSSLRKDHEIQMKSLTKKHEENC                 
Sbjct: 601 YHKEELQRIQSQAENELRERLSSLRKDHEIQMKSLTKKHEENCQKLQDELELQKSKEEKQ 660

Query: 661 RALLQLQWKVMGETQQVDQEVNSKKEYSVSSIKRRDPYIRKEHQLQLVSPETKRKDVNLS 720
           RALLQLQWKVMGETQQVDQEVNSKKEYSVSSIKRRDPYIRKEHQLQLVSPETKRKDVNLS
Sbjct: 661 RALLQLQWKVMGETQQVDQEVNSKKEYSVSSIKRRDPYIRKEHQLQLVSPETKRKDVNLS 720

Query: 721 GIIQSPITNMLRKVEKGTQDIPKHRKVTHHEYEVETANGRITKRRKTKSTVMFGVQEPNT 780
           GIIQSPITNMLRKVEKGTQDIPKHRKVTHHEYEVETANGRITKRRKTKSTVMFGVQEPNT
Sbjct: 721 GIIQSPITNMLRKVEKGTQDIPKHRKVTHHEYEVETANGRITKRRKTKSTVMFGVQEPNT 780

Query: 781 QKSLHDTADKDPTKMKKVVAGSHPHPANIGELFSEGSLNPYAEDPYAFG 829
           QKSLHDTADKDPTKMKKVVAGSHPHPANIGELFSEGSLNPYAEDPYAFG
Sbjct: 781 QKSLHDTADKDPTKMKKVVAGSHPHPANIGELFSEGSLNPYAEDPYAFG 829



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.125    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,020,276
Number of extensions: 765857
Number of successful extensions: 4002
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3991
Number of HSP's successfully gapped: 4
Length of query: 829
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 720
Effective length of database: 11,344,475
Effective search space: 8168022000
Effective search space used: 8168022000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 160 (66.2 bits)