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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0452500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Prefoldin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0345) R2 : 0.616
β1 : -0.0736 (0.15) R2dD : 0.000345 R2D : -0.0252
β2 : 1.95 (0.0954) R2dC : 0.515 R2C : 0.0818
β3 : -3.33 (0.227) R2dE : 0.28 R2E : -0.0974
β4 : -2.79 (0.389) R2dD*C : 0.0629 R2D*C : -0.0382
β5 : 9.19 (1.14) R2dD*E : 0.118 R2D*E : 0.1
γ1 : 0.556 (0.0723) R2dN8 : 0.0747 R2N8 : 0.00744
σ : 0.604
deviance : 165.02
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_____
C
peak time of C : 14.8
E
wheather : temperature
threshold : 4.106
memory length : 11
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.03
open length of G : 23.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.02 0.604 3.62 -0.0736 1.95 -3.33 -2.79 9.19 0.556 14.8 4.106 11 3.03 23.8
188.33 0.644 3.73 -0.799 2.05 -3.67 -1.07 -- 0.373 14.8 3.768 21 3.32 23.3
183.08 0.635 3.69 -0.505 1.99 -3.6 -- 4.86 0.431 14.8 2.37 9 3.58 23.3
188.1 0.639 3.73 -0.833 2.1 -4.06 -- -- 0.347 14.9 -1.317 28 3.07 22.9
333.26 0.855 3.7 -0.781 -- -1 -- 10.3 0.308 -- -8.975 8 3.88 22.2
285.63 0.792 3.76 -1.26 1.21 -- -1.21 -- 0.223 15.1 -- -- -- --
290.44 0.798 3.77 -1.29 1.2 -- -- -- 0.216 15.1 -- -- -- --
300.33 0.807 3.68 -0.924 -- -2.12 -- -- 0.478 -- -12.61 1175 3.43 21.4
206.18 0.669 3.72 -- 2.06 -4.23 -- -- 0.393 14.9 -0.8454 37 3.05 22.9
373.15 0.903 3.77 -1.34 -- -- -- -- 0.185 -- -- -- -- --
334.3 0.855 3.73 -- 1.23 -- -- -- 0.36 15.1 -- -- -- --
312.99 0.824 3.71 -- -- -2.58 -- -- 0.524 -- -12.99 1204 3.03 21.4
420.61 0.957 3.74 -- -- -- -- -- 0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.43 temperature 10.0 30 > th dose dependent rect. 3 23
9 195.72 wind 9.0 30 < th dose independent rect. 3 23
11 197.03 radiation 1.0 43200 < th dose dependent rect. 3 1
20 202.28 temperature 10.0 270 > th dose dependent rect. 3 19
25 202.91 temperature 20.0 30 > th dose dependent rect. 2 1
26 202.92 atmosphere 1000.0 30 > th dose dependent rect. 2 1
28 202.99 temperature 10.0 30 > th dose dependent rect. 2 1
30 203.00 atmosphere 1000.0 30 > th dose independent rect. 2 1
31 203.02 wind 5.0 30 < th dose independent rect. 2 1
33 203.04 wind 7.0 30 < th dose dependent rect. 2 1
36 203.07 humidity 50.0 30 > th dose dependent rect. 2 1
40 203.09 temperature 10.0 30 > th dose independent rect. 2 1
42 203.09 temperature 30.0 30 < th dose independent rect. 2 1
43 203.09 humidity 50.0 30 > th dose independent rect. 2 1
47 203.09 atmosphere 1010.0 30 < th dose independent rect. 2 1
49 203.09 radiation 1.0 30 < th dose independent rect. 2 1
54 203.09 precipitation 0.1 30 < th dose independent rect. 2 1
55 203.09 temperature 10.0 30 > th dose independent rect. 3 23
57 203.09 radiation 1.0 30 < th dose dependent rect. 2 1
62 203.09 precipitation 0.1 30 < th dose dependent rect. 2 1
74 203.61 atmosphere 1015.0 30 < th dose dependent rect. 2 1
75 203.77 wind 9.0 1440 < th dose independent rect. 3 1
76 203.77 temperature 10.0 1440 > th dose independent rect. 3 1
79 203.77 temperature 30.0 1440 < th dose independent rect. 3 1
83 203.77 humidity 50.0 1440 > th dose independent rect. 3 1
92 203.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
93 203.77 radiation 1.0 1440 < th dose independent rect. 3 1
113 203.77 temperature 10.0 1440 > th dose independent rect. 4 23
116 203.77 radiation 1.0 1440 < th dose dependent rect. 3 1
131 203.95 atmosphere 1000.0 30 > th dose independent rect. 3 23
132 204.00 temperature 30.0 30 < th dose dependent rect. 2 1
139 205.02 wind 1.0 30 > th dose independent rect. 2 1
204 209.72 precipitation 0.1 30 < th dose independent rect. 3 23
205 209.72 precipitation 0.1 30 < th dose dependent rect. 3 23
291 224.03 temperature 10.0 720 > th dose dependent rect. 3 12
334 226.72 atmosphere 1010.0 30 < th dose independent rect. 3 23
345 227.57 temperature 20.0 270 > th dose independent rect. 3 19
372 229.44 temperature 30.0 90 < th dose dependent rect. 9 18
383 229.82 temperature 10.0 720 > th dose dependent rect. 19 20
387 230.17 temperature 30.0 10 < th dose dependent rect. 9 19
417 231.27 temperature 30.0 90 < th dose dependent rect. 7 22
435 232.09 temperature 30.0 90 < th dose dependent rect. 9 10
458 232.67 temperature 30.0 10 < th dose dependent rect. 7 23
471 233.05 temperature 30.0 270 < th dose dependent rect. 21 20
474 233.12 temperature 25.0 10 < th dose independent rect. 22 20
481 233.36 temperature 30.0 720 < th dose dependent rect. 7 3
497 233.62 temperature 30.0 90 < th dose dependent rect. 21 22
499 233.63 temperature 30.0 90 < th dose dependent rect. 23 20
516 233.86 wind 9.0 30 < th dose dependent rect. 3 23
517 233.87 temperature 30.0 90 < th dose dependent rect. 23 18
520 233.92 temperature 30.0 720 < th dose dependent rect. 6 7
536 234.21 temperature 30.0 10 < th dose dependent rect. 23 23
542 234.30 temperature 25.0 10 < th dose independent rect. 8 20
558 234.49 temperature 30.0 10 < th dose dependent rect. 23 19
566 234.71 temperature 15.0 720 > th dose dependent sin 4 NA
576 234.78 temperature 10.0 720 > th dose dependent rect. 8 7
577 234.79 temperature 30.0 10 < th dose dependent rect. 21 23
592 235.05 temperature 30.0 10 < th dose dependent rect. 9 23
609 235.33 humidity 50.0 30 > th dose independent rect. 3 23
622 235.46 temperature 30.0 720 < th dose dependent sin 3 NA
633 235.54 temperature 25.0 30 > th dose independent rect. 8 23
660 235.86 temperature 25.0 10 < th dose independent rect. 20 22
672 236.08 temperature 10.0 10 > th dose dependent no NA NA
676 236.11 temperature 30.0 10 < th dose dependent rect. 5 23
750 236.85 temperature 30.0 10 < th dose dependent no NA NA
766 237.04 temperature 30.0 10 < th dose dependent rect. 17 23
768 237.09 temperature 30.0 10 < th dose dependent rect. 23 17
772 237.13 temperature 30.0 30 < th dose dependent rect. 1 23
797 237.35 temperature 30.0 30 < th dose dependent rect. 11 23
822 237.51 temperature 30.0 10 < th dose dependent rect. 15 23
860 237.88 temperature 30.0 30 < th dose dependent rect. 13 23
865 237.95 temperature 25.0 10 < th dose independent rect. 6 22
904 238.38 temperature 20.0 720 > th dose independent rect. 3 12
917 238.44 temperature 20.0 720 < th dose dependent rect. 21 18
920 238.47 temperature 25.0 270 < th dose dependent sin 23 NA
948 238.59 temperature 15.0 90 > th dose dependent rect. 3 10
951 238.60 atmosphere 1015.0 1440 < th dose independent rect. 3 1
966 238.68 temperature 15.0 270 > th dose dependent rect. 15 23