BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0448600 Os04g0448600|AK068709
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0448600  ChaC-like protein family protein                    395   e-110
Os02g0465900  ChaC-like protein family protein                    194   3e-50

>Os04g0448600 ChaC-like protein family protein
          Length = 187

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MAMWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQGSTDHRGTPEFPGRTVTLEHQPGA 60
           MAMWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQGSTDHRGTPEFPGRTVTLEHQPGA
Sbjct: 1   MAMWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQGSTDHRGTPEFPGRTVTLEHQPGA 60

Query: 61  TCWGVAYKISTEQDKQTALEHLEVREKQYDEKIYLDLYMDSSPKTPAVKNVMVYLATTNK 120
           TCWGVAYKISTEQDKQTALEHLEVREKQYDEKIYLDLYMDSSPKTPAVKNVMVYLATTNK
Sbjct: 61  TCWGVAYKISTEQDKQTALEHLEVREKQYDEKIYLDLYMDSSPKTPAVKNVMVYLATTNK 120

Query: 121 QSNQNYLGPAPLEEMAKQIYLAEGPSGPNKEYLFKLEDALNKIGVVDPHVQDLANAVRKY 180
           QSNQNYLGPAPLEEMAKQIYLAEGPSGPNKEYLFKLEDALNKIGVVDPHVQDLANAVRKY
Sbjct: 121 QSNQNYLGPAPLEEMAKQIYLAEGPSGPNKEYLFKLEDALNKIGVVDPHVQDLANAVRKY 180

Query: 181 PDTAVSC 187
           PDTAVSC
Sbjct: 181 PDTAVSC 187



>Os02g0465900 ChaC-like protein family protein
          Length = 216

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

Query: 1   MAMWVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQGSTDHRGTPEFPGRTVTLEHQPGA 60
           M +WVFGYGSL+WNPGF  D +++GFV+ Y+R F     DHRGTPE P RT TLE    A
Sbjct: 1   MVLWVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDEEA 60

Query: 61  TCWGVAYKISTEQDK-QTALEHLEVREKQYDEKIYLDLYMDSSPKTPAVKNVMVYLATTN 119
            CWG+AY +     K Q A+++LE RE +YD+KI +D Y +     PAV  V+V+++T +
Sbjct: 61  ICWGIAYCVKGGLKKEQEAMKYLERRECEYDQKISVDFYKEGDSLKPAVTGVLVFVSTPD 120

Query: 120 KQSNQNYLGPAPLEEMAKQIYLAEGPSGPNKEYLFKLEDALNKIGVVDPHVQDLANAVRK 179
              N+ YLGPAPLE+MA+QI  A GP+G N++YLF +E AL+ I   D  + +LAN VRK
Sbjct: 121 PVGNKYYLGPAPLEDMARQIATANGPNGNNRDYLFSMEKALSNICHEDDSIIELANEVRK 180



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,695,900
Number of extensions: 269203
Number of successful extensions: 748
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)