Os04g0448600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ChaC-like protein family protein.
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Os04g0448600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ChaC-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.55 | 0.524 | 11.5 | -0.268 | 1.92 | -1.97 | 1.62 | -1.64 | -0.179 | 9.08 | 20.56 | 1392 | -- | -- |
| 129.92 | 0.531 | 11.4 | 0.0104 | 1.9 | -1.67 | 1.77 | -- | -0.12 | 9.03 | 20.8 | 1347 | -- | -- |
| 133.65 | 0.538 | 11.5 | -0.219 | 1.92 | -2 | -- | -1.72 | -0.175 | 9.1 | 20.6 | 1392 | -- | -- |
| 139.4 | 0.55 | 11.4 | 0.0839 | 1.89 | -1.74 | -- | -- | -0.125 | 9.09 | 20.6 | 1391 | -- | -- |
| 317.26 | 0.83 | 11.5 | -0.26 | -- | -1.92 | -- | -1.49 | -0.149 | -- | 20.8 | 850 | -- | -- |
| 198.38 | 0.66 | 11.5 | -0.705 | 1.94 | -- | 1.76 | -- | -0.515 | 9.19 | -- | -- | -- | -- |
| 209.37 | 0.678 | 11.5 | -0.641 | 1.93 | -- | -- | -- | -0.513 | 9.23 | -- | -- | -- | -- |
| 316.91 | 0.829 | 11.5 | -0.158 | -- | -1.5 | -- | -- | -0.0289 | -- | 22.2 | 890 | -- | -- |
| 139.51 | 0.55 | 11.4 | -- | 1.91 | -1.74 | -- | -- | -0.128 | 9.1 | 20.6 | 1391 | -- | -- |
| 426.54 | 0.965 | 11.6 | -0.648 | -- | -- | -- | -- | -0.504 | -- | -- | -- | -- | -- |
| 220.2 | 0.694 | 11.5 | -- | 1.93 | -- | -- | -- | -0.442 | 9.26 | -- | -- | -- | -- |
| 317.1 | 0.829 | 11.4 | -- | -- | -1.57 | -- | -- | 0.0434 | -- | 22.2 | 889 | -- | -- |
| 437.63 | 0.976 | 11.5 | -- | -- | -- | -- | -- | -0.432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 2 | 123.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 15 | 124.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 19 | 124.50 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 68 | 125.61 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 259 | 127.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 6 |
| 287 | 128.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 304 | 128.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 314 | 128.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 324 | 128.30 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 344 | 128.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 377 | 128.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 447 | 129.39 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 451 | 129.44 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 454 | 129.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 461 | 129.50 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 476 | 129.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 485 | 129.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 532 | 130.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 534 | 130.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 557 | 130.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 565 | 130.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 688 | 131.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 750 | 131.58 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 809 | 132.07 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 816 | 132.14 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 877 | 132.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 914 | 132.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |