BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0447300 Os04g0447300|AK111006
         (153 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0447300  Conserved hypothetical protein                      135   1e-32
Os11g0107133                                                       95   2e-20
Os01g0880500  Conserved hypothetical protein                       69   2e-12

>Os04g0447300 Conserved hypothetical protein
          Length = 153

 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/87 (81%), Positives = 71/87 (81%)

Query: 29  TARESLDHISINCTGGVGATSGCRSVHSRRSAPTRRARLLVPAQPRLCLDSPDWRQSAAX 88
           TARESLDHISINCTGGVGATSGCRSVHSRRSAPTRRARLLVPAQPRLCLDSPDWRQSAA 
Sbjct: 29  TARESLDHISINCTGGVGATSGCRSVHSRRSAPTRRARLLVPAQPRLCLDSPDWRQSAAG 88

Query: 89  XXXXXXXXXXXXXXXSWLASESWWFVG 115
                          SWLASESWWFVG
Sbjct: 89  REWEQERDDGDDRRGSWLASESWWFVG 115



>Os11g0107133 
          Length = 106

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 50/70 (71%)

Query: 48  TSGCRSVHSRRSAPTRRARLLVPAQPRLCLDSPDWRQSAAXXXXXXXXXXXXXXXXSWLA 107
            SGCRSVHSRRSAPTR ARLLVPAQPRL LDSPDWRQSAA                SWLA
Sbjct: 1   MSGCRSVHSRRSAPTRAARLLVPAQPRLFLDSPDWRQSAAGREWEWERDDDDDIRGSWLA 60

Query: 108 SESWWFVGDD 117
           S SWWFVGDD
Sbjct: 61  SGSWWFVGDD 70



>Os01g0880500 Conserved hypothetical protein
          Length = 98

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 37/56 (66%)

Query: 62  TRRARLLVPAQPRLCLDSPDWRQSAAXXXXXXXXXXXXXXXXSWLASESWWFVGDD 117
            RRARLLVPAQPRL LDSPDWRQSAA                SWLAS SWWFVGDD
Sbjct: 1   MRRARLLVPAQPRLFLDSPDWRQSAAGREWERERDDGDERRGSWLASGSWWFVGDD 56



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,057,754
Number of extensions: 95233
Number of successful extensions: 267
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 61
Effective length of database: 12,232,113
Effective search space: 746158893
Effective search space used: 746158893
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)