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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0447300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0318) R2 : 7.8e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00126 (0.067) R2dN8 : 1.01e-06 R2N8 : 7.8e-07
σ : 0.599
deviance : 164.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.23 0.562 3.15 0.111 0.162 3.18 -0.0409 9.14 0.0161 1.99 9.299 3 -- --
158.07 0.586 3.11 0.164 0.171 1.76 0.294 -- 0.064 0.982 9.201 3 -- --
143.23 0.557 3.15 0.112 0.162 3.18 -- 9.15 0.0164 1.98 9.296 3 -- --
156.58 0.583 3.13 0.109 0.167 1.49 -- -- 0.0223 2.98 9.201 3 -- --
144.81 0.56 3.15 0.118 -- 3.17 -- 9.12 0.0201 -- 9.282 3 -- --
163.07 0.599 3.14 0.07 0.159 -- -0.12 -- 0.0054 2.66 -- -- -- --
163.12 0.598 3.14 0.0729 0.158 -- -- -- 0.00609 2.69 -- -- -- --
158.18 0.586 3.13 0.115 -- 1.47 -- -- 0.0263 -- 9.218 3 -- --
156.89 0.583 3.14 -- 0.169 1.46 -- -- 0.00986 2.98 9.225 3 -- --
164.58 0.599 3.14 0.0797 -- -- -- -- 0.0101 -- -- -- -- --
163.26 0.598 3.14 -- 0.16 -- -- -- -0.00203 2.69 -- -- -- --
158.53 0.586 3.14 -- -- 1.45 -- -- 0.0134 -- 9.233 3 -- --
164.75 0.599 3.14 -- -- -- -- -- 0.00126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.05 wind 9.0 30 > th dose independent rect. 1 10
5 141.05 wind 9.0 30 > th dose dependent rect. 1 10
9 141.07 wind 5.0 10 > th dose independent rect. 10 1
13 141.07 humidity 60.0 10 < th dose independent rect. 10 1
18 141.07 wind 5.0 10 > th dose dependent rect. 10 1
22 141.07 humidity 60.0 10 < th dose dependent rect. 10 1
40 141.26 wind 7.0 30 > th dose dependent rect. 7 4
358 150.12 atmosphere 1000.0 10 < th dose independent rect. 1 1
365 150.12 atmosphere 1000.0 10 < th dose dependent rect. 1 1
393 151.45 temperature 25.0 30 > th dose dependent rect. 6 1
410 152.17 atmosphere 1010.0 30 < th dose independent rect. 6 1
413 152.38 radiation 10.0 30 < th dose independent rect. 6 1
418 152.82 atmosphere 1010.0 30 < th dose dependent rect. 6 1
419 152.86 temperature 25.0 30 > th dose dependent rect. 21 1
429 153.36 wind 9.0 10 > th dose independent sin 10 NA
434 153.68 wind 9.0 10 < th dose independent sin 10 NA
437 153.74 wind 3.0 30 > th dose dependent rect. 6 1
450 154.41 atmosphere 1010.0 30 < th dose dependent rect. 2 1
458 155.05 humidity 90.0 30 < th dose dependent rect. 6 1
467 155.34 atmosphere 1000.0 90 < th dose independent rect. 24 5
471 155.46 atmosphere 1000.0 10 < th dose independent rect. 1 7
472 155.47 temperature 25.0 10 > th dose dependent rect. 20 11
474 155.50 humidity 90.0 30 > th dose independent rect. 2 1
481 155.52 wind 9.0 10 < th dose independent rect. 3 23
483 155.54 temperature 20.0 30 > th dose dependent rect. 2 1
494 155.60 temperature 20.0 30 > th dose independent rect. 2 1
495 155.61 temperature 25.0 30 < th dose independent rect. 2 1
504 155.65 humidity 80.0 30 > th dose dependent rect. 2 1
509 155.70 wind 3.0 30 < th dose independent rect. 2 1
512 155.70 radiation 1.0 10 > th dose dependent rect. 6 1
518 155.73 wind 3.0 30 < th dose dependent rect. 2 1
528 155.76 wind 9.0 30 < th dose independent rect. 2 1
529 155.76 temperature 10.0 30 > th dose independent rect. 2 1
532 155.76 humidity 50.0 30 > th dose independent rect. 2 1
535 155.76 atmosphere 995.0 30 > th dose independent rect. 2 1
536 155.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
538 155.76 radiation 1.0 30 < th dose independent rect. 2 1
543 155.76 precipitation 0.1 30 < th dose independent rect. 2 1
544 155.76 temperature 10.0 30 > th dose independent rect. 3 23
545 155.76 radiation 1.0 30 < th dose dependent rect. 2 1
550 155.76 precipitation 0.1 30 < th dose dependent rect. 2 1
564 155.90 wind 1.0 30 > th dose independent rect. 2 1
570 155.98 wind 3.0 30 > th dose independent rect. 6 1
595 156.08 temperature 25.0 90 > th dose independent rect. 5 2
596 156.09 atmosphere 1005.0 30 > th dose dependent rect. 2 1
605 156.14 atmosphere 995.0 30 > th dose dependent rect. 2 1
606 156.16 temperature 30.0 30 < th dose dependent rect. 2 1
613 156.31 atmosphere 1005.0 30 > th dose independent rect. 2 1
617 156.34 humidity 60.0 270 < th dose independent rect. 18 1
618 156.34 radiation 20.0 30 < th dose dependent rect. 6 1
620 156.35 humidity 60.0 270 < th dose dependent rect. 18 1
633 156.49 atmosphere 1000.0 10 < th dose dependent rect. 1 7
709 157.05 humidity 50.0 720 > th dose independent rect. 7 8
738 157.24 wind 9.0 1440 < th dose independent rect. 7 1
739 157.24 temperature 10.0 1440 > th dose independent rect. 7 1
743 157.24 temperature 30.0 1440 < th dose independent rect. 7 1
747 157.24 humidity 50.0 1440 > th dose independent rect. 7 1
752 157.24 atmosphere 995.0 1440 > th dose independent rect. 7 1
753 157.24 atmosphere 1015.0 1440 < th dose independent rect. 7 1
755 157.24 temperature 10.0 1440 > th dose independent rect. 8 23
761 157.27 precipitation 0.1 720 < th dose independent rect. 19 8
762 157.27 precipitation 0.1 720 < th dose dependent rect. 19 8
763 157.28 humidity 90.0 30 < th dose independent rect. 6 1
766 157.31 wind 9.0 10 < th dose independent rect. 7 23
782 157.43 humidity 80.0 30 > th dose independent rect. 6 1
784 157.44 wind 5.0 30 < th dose independent rect. 6 1
787 157.44 temperature 10.0 30 > th dose independent rect. 6 1
789 157.44 temperature 30.0 30 < th dose independent rect. 6 1
790 157.44 humidity 50.0 30 > th dose independent rect. 6 1
793 157.44 atmosphere 995.0 30 > th dose independent rect. 6 1
798 157.44 precipitation 0.1 30 < th dose independent rect. 6 1
802 157.44 temperature 10.0 30 > th dose independent rect. 7 23
803 157.44 precipitation 0.1 30 < th dose dependent rect. 6 1
811 157.47 radiation 1.0 30 > th dose independent rect. 6 1
812 157.47 temperature 30.0 270 > th dose dependent rect. 18 1
828 157.48 atmosphere 1005.0 30 > th dose independent rect. 6 1
831 157.48 radiation 10.0 43200 < th dose dependent rect. 21 7
836 157.51 wind 7.0 1440 < th dose independent rect. 15 1
837 157.53 wind 7.0 1440 > th dose independent rect. 15 1
840 157.58 temperature 15.0 30 > th dose dependent rect. 20 7
849 157.63 wind 1.0 30 < th dose independent rect. 6 1
851 157.64 wind 9.0 720 < th dose independent rect. 19 8
852 157.65 temperature 15.0 720 > th dose independent rect. 19 8
856 157.66 wind 5.0 1440 > th dose dependent rect. 15 1
864 157.69 temperature 15.0 720 > th dose independent rect. 3 16
875 157.74 wind 7.0 10 < th dose independent rect. 3 17
877 157.75 atmosphere 1015.0 720 < th dose independent rect. 3 16
880 157.77 temperature 15.0 720 > th dose independent rect. 7 8
882 157.77 radiation 1.0 720 < th dose dependent rect. 19 8
884 157.78 temperature 30.0 720 < th dose independent rect. 19 8
885 157.78 humidity 50.0 720 > th dose independent rect. 19 8
886 157.78 atmosphere 995.0 720 > th dose independent rect. 19 8
887 157.78 radiation 1.0 720 < th dose independent rect. 19 8
898 157.80 temperature 30.0 1440 < th dose independent rect. 18 3
906 157.82 atmosphere 1000.0 30 > th dose independent rect. 3 3
907 157.83 humidity 50.0 30 > th dose dependent rect. 6 1
908 157.84 temperature 10.0 30 > th dose dependent rect. 6 21
920 157.90 atmosphere 1000.0 10 > th dose independent rect. 16 14
927 157.92 wind 9.0 30 < th dose dependent rect. 6 1
929 157.93 temperature 15.0 720 > th dose independent rect. 15 16
935 157.96 atmosphere 1000.0 30 > th dose independent rect. 3 17
937 157.97 temperature 30.0 720 > th dose independent rect. 18 1
964 158.02 atmosphere 1000.0 10 > th dose independent rect. 24 6
965 158.02 radiation 10.0 30 < th dose dependent rect. 3 7
968 158.03 atmosphere 1015.0 720 < th dose independent rect. 7 8
970 158.03 precipitation 0.1 30 < th dose independent rect. 6 21
971 158.03 precipitation 0.1 30 < th dose dependent rect. 6 21
995 158.10 radiation 1.0 90 < th dose independent rect. 3 7
997 158.11 radiation 1.0 90 < th dose independent rect. 3 5
1000 158.11 radiation 1.0 90 < th dose independent rect. 3 10