BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0441900 Os04g0441900|AK067882
         (612 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0441900  Cleft lip and palate transmembrane 1 family pr...  1162   0.0  

>Os04g0441900 Cleft lip and palate transmembrane 1 family protein
          Length = 612

 Score = 1162 bits (3005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/601 (93%), Positives = 563/601 (93%)

Query: 12  LHLPRFDXXXXXXXXXXXXXXXXXXXXTIAGIVRMAVFWYFAAKFFGPKRPPAEPGMLMS 71
           LHLPRFD                    TIAGIVRMAVFWYFAAKFFGPKRPPAEPGMLMS
Sbjct: 12  LHLPRFDLARRRRRAQAARQAGGGLGQTIAGIVRMAVFWYFAAKFFGPKRPPAEPGMLMS 71

Query: 72  NLFQKGEPLDMWMYLSENEKFNDFSNEDALVWHEANIPYAVWGPTSTRTHTLTYYPSEAI 131
           NLFQKGEPLDMWMYLSENEKFNDFSNEDALVWHEANIPYAVWGPTSTRTHTLTYYPSEAI
Sbjct: 72  NLFQKGEPLDMWMYLSENEKFNDFSNEDALVWHEANIPYAVWGPTSTRTHTLTYYPSEAI 131

Query: 132 KNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTHPVVAYLRKPKDGKKKSLLGDSSES 191
           KNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTHPVVAYLRKPKDGKKKSLLGDSSES
Sbjct: 132 KNNGSLYAHVYFARSGYPVDPTDPEYEQSSAFGRTHPVVAYLRKPKDGKKKSLLGDSSES 191

Query: 192 NEQPPPKENKDSVDKDEGPVEYISYWKPNVTINLVDDFTRYPHNNVPPNVAPYLNVDPSS 251
           NEQPPPKENKDSVDKDEGPVEYISYWKPNVTINLVDDFTRYPHNNVPPNVAPYLNVDPSS
Sbjct: 192 NEQPPPKENKDSVDKDEGPVEYISYWKPNVTINLVDDFTRYPHNNVPPNVAPYLNVDPSS 251

Query: 252 NNYYPTVFFNEFWLLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQMEQSFQVHRSYG 311
           NNYYPTVFFNEFWLLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQMEQSFQVHRSYG
Sbjct: 252 NNYYPTVFFNEFWLLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQMEQSFQVHRSYG 311

Query: 312 SMLEGEADELKRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKS 371
           SMLEGEADELKRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKS
Sbjct: 312 SMLEGEADELKRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKS 371

Query: 372 VVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIPMLRFRD 431
           VVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIPMLRFRD
Sbjct: 372 VVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIPMLRFRD 431

Query: 432 RESYAQNKTKEYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVYMFG 491
           RESYAQNKTKEYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVYMFG
Sbjct: 432 RESYAQNKTKEYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVYMFG 491

Query: 492 FIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFL 551
           FIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFL
Sbjct: 492 FIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVIFL 551

Query: 552 IYLYQRWVYPVDKKRVNEYGFGGEDEPQAPQTLEGSDLXXXXXXXXXXXXXXXXXXDKKT 611
           IYLYQRWVYPVDKKRVNEYGFGGEDEPQAPQTLEGSDL                  DKKT
Sbjct: 552 IYLYQRWVYPVDKKRVNEYGFGGEDEPQAPQTLEGSDLAAASQQAGAEAEAETSTEDKKT 611

Query: 612 K 612
           K
Sbjct: 612 K 612



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,168,358
Number of extensions: 856563
Number of successful extensions: 1922
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1922
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 505
Effective length of database: 11,448,903
Effective search space: 5781696015
Effective search space used: 5781696015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)