Os04g0441900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cleft lip and palate transmembrane 1 family protein.
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Os04g0441900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cleft lip and palate transmembrane 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.66 | 0.238 | 11.9 | 0.512 | 1.29 | -0.841 | 0.623 | -0.191 | 0.405 | 18.3 | 10.42 | 9 | -- | -- |
| 25.68 | 0.238 | 11.9 | 0.535 | 1.28 | -0.844 | 0.602 | -- | 0.41 | 18.3 | 9.731 | 8 | -- | -- |
| 26.56 | 0.242 | 11.9 | 0.521 | 1.28 | -0.838 | -- | -0.0453 | 0.41 | 18.3 | 10.42 | 9 | -- | -- |
| 26.56 | 0.242 | 11.9 | 0.527 | 1.28 | -0.838 | -- | -- | 0.412 | 18.3 | 9.731 | 8 | -- | -- |
| 105.94 | 0.482 | 11.9 | 0.425 | -- | -0.189 | -- | 0.368 | 0.311 | -- | 14.32 | 7 | -- | -- |
| 32.35 | 0.267 | 11.9 | 0.378 | 1.18 | -- | 0.575 | -- | 0.294 | 19 | -- | -- | -- | -- |
| 33.2 | 0.27 | 11.9 | 0.367 | 1.18 | -- | -- | -- | 0.296 | 18.9 | -- | -- | -- | -- |
| 105.65 | 0.479 | 11.9 | 0.327 | -- | 0.188 | -- | -- | 0.273 | -- | 25 | 11 | -- | -- |
| 33.22 | 0.27 | 11.9 | -- | 1.24 | -0.583 | -- | -- | 0.323 | 18.5 | 9.731 | 8 | -- | -- |
| 106.52 | 0.482 | 11.9 | 0.343 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 36.75 | 0.284 | 11.9 | -- | 1.18 | -- | -- | -- | 0.255 | 18.9 | -- | -- | -- | -- |
| 88.22 | 0.437 | 11.9 | -- | -- | 0.844 | -- | -- | 0.197 | -- | 25 | 476 | -- | -- |
| 109.62 | 0.489 | 11.9 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 3 | 24.35 | temperature | 10 | 30 | > th | dose dependent | sin | 5 | NA |
| 13 | 24.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 14 | 24.55 | temperature | 30 | 30 | < th | dose dependent | sin | 4 | NA |
| 20 | 24.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 31 | 24.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 35 | 24.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 37 | 24.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 42 | 24.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 54 | 24.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 78 | 25.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 94 | 25.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 100 | 25.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 120 | 25.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 182 | 25.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 185 | 25.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 200 | 25.42 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 233 | 25.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 255 | 25.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 303 | 25.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 329 | 25.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 359 | 25.68 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 392 | 25.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 421 | 25.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 471 | 25.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 472 | 25.82 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 476 | 25.82 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 482 | 25.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 495 | 25.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 514 | 25.85 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 556 | 25.88 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 580 | 25.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 588 | 25.91 | temperature | 10 | 720 | > th | dose dependent | sin | 12 | NA |
| 602 | 25.91 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 635 | 25.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 637 | 25.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 649 | 25.95 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 669 | 25.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 686 | 25.96 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 788 | 26.04 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 806 | 26.05 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 817 | 26.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 842 | 26.06 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 973 | 26.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 975 | 26.14 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 990 | 26.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 20 |