BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0441700 Os04g0441700|AK072763
         (269 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0441700  Conserved hypothetical protein                      121   4e-28

>Os04g0441700 Conserved hypothetical protein
          Length = 269

 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 91/232 (39%)

Query: 38  LHAGAARLLVEELDEPXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXLXXXX 97
           LHAGAARLLVEELDEP                D                      L    
Sbjct: 38  LHAGAARLLVEELDEPHGGEHLRHAEHEELRHDPQHGHRPRRRAAGGQGQVAAPVLDGGG 97

Query: 98  XXXXXXXXXXXXXXPLERGDPGPRPCGAPHXXXXXXXXXXXXXQQHGVGDGLQXXXXXXX 157
                         PLERGDPGPRPCGAPH             QQHGVGDGLQ       
Sbjct: 98  GDHGERHGAEAHADPLERGDPGPRPCGAPHERDEEELVRRDERQQHGVGDGLQRRRRDAE 157

Query: 158 XXXXXXXXXVHGAPXXXXXXXXXXXXGVEDDGAREDGRHGEERLGLPHXXXXXXXXXXXX 217
                    VHGAP            GVEDDGAREDGRHGEERLGLPH            
Sbjct: 158 RGAGAAERGVHGAPLLHRERLQLRQHGVEDDGAREDGRHGEERLGLPHLGRRAQPPRALR 217

Query: 218 XXXXXXXXXXXXXXVQEPAHVSVTDQSHXXXXXXXXXXXXXXXXXXWDEELT 269
                         VQEPAHVSVTDQSH                  WDEELT
Sbjct: 218 LRVRPLLRRPDARLVQEPAHVSVTDQSHADAATCMARGTAAAGAGCWDEELT 269



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,995,468
Number of extensions: 82505
Number of successful extensions: 108
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)